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Full text 2026

Investigating the Efficiency of Ultraviolet Photodissociation in Peptides Modified with <i>N</i>-Terminal UV-Absorbing Chromophores

Levin N, Demyanenko Y, Kitano E, et al.

Ultraviolet photodissociation (UVPD) has emerged as a powerful alternative to conventional collision-induced dissociation (CID) for peptide and protein sequencing in mass spectrometry-based proteomics. However, the UVPD efficiency depends on the presence of UV-absorbing chromophores within …

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Bioinformatics
Full text 2026

The proteomics and phosphoproteomics landscape of melanoma under T cell attack

Franciosa G, Jensen AWP, Martinez-Val A, et al.

Understanding how tumor cells interact with tumor-infiltrating lymphocytes (TILs) is crucial for improving immunotherapy, yet protein-level changes remain largely unexplored. To address this, we profile the early responses of patient-derived melanoma cells co-cultured with matched …

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Bioinformatics
Full text 2026

Paired genomic and proteomic analysis of <i>Acinetobacter towneri</i> from waste sludge reveals an extensive repertoire of enzymes for breakdown of hydrocarbons

Sandholm RM, Rojas Calderón D, Dahl Ø, et al.

Crude oil, primarily consisting of alkanes, and plastic derivatives are integral to modern society, yet their widespread use has led to persistent pollution that devastates ecosystems worldwide. Enzymatic and microbial biodegradation are highly desirable to …

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Bioinformatics
Full text 2026

Unveiling biomarkers of telitacicept's efficacy in SLE treatment through proteomics and metabolomics

Nie H, Chang S, Chen H, et al.

<h4>Background</h4>The pathogenesis of systemic lupus erythematosus (SLE) is closely associated with abnormal activation of B lymphocytes. Telitacicept simultaneously blocks B-cell stimulating factors and proliferation-inducing ligands, thereby inhibiting B-cell proliferation and differentiation, demonstrating favorable therapeutic efficacy …

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Bioinformatics
Full text 2026

Proteome-wide quantification of inositol pyrophosphate-protein interactions

Richter A, Isern JA, Ruwolt M, et al.

Inositol polyphosphates (InsPs) and inositol pyrophosphates (PP-InsPs) are highly phosphorylated signaling molecules involved in diverse cellular processes. To resolve discrete signaling events mediated by these structurally related metabolites, a mass spectrometry-based approach was developed to …

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Bioinformatics
Full text 2026

Affinity Proteomics-Based Non-Invasive Detection of Clinically Significant Liver Disease

Balasubramani S, Remih K, Karl AS, et al.

<h4>Background</h4>Non-invasive biomarkers predicting major adverse liver outcomes (MALO) are urgently needed.<h4>Aims</h4>We assessed a novel, proximity extension assay-based high-throughput targeted proteomics.<h4>Methods</h4>Plasma proteomic data (> 2900 proteins) and clinical information were accessed from the population-based UK Biobank …

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Bioinformatics