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10021 results

Full text 2026

The ambrosial mycobiota of Treptoplatypus oxyurus (Coleoptera, Platypodidae): a unique island of fungal diversity revealing Wilhelmdebeerea oxyuri gen. et sp. nov. (Ophiostomatales), and two new yeast species Blastobotrys sasensis sp. nov., and Sugiyamaella casensis sp. nov. (Dipodascales)

Kolařík M, Vadkertiová R, Knížek M, et al.

Ambrosia beetles (Coleoptera, Curculionidae) form obligate nutritional symbioses with ambrosia fungi cultivated within their galleries. Among them, the pinhole borers (Platypodinae) are predominantly tropical, with only two representatives native to Europe. One of them, the …

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Bioinformatics

Full text 2024

Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum

Chi SI, Akuma M, Xu R, et al.

Long-term use of chemical fungicides to control plant diseases caused by fungi and oomycetes has led to pathogen resistance and negative impacts on public health and environment. There is a global search for eco-friendly methods …

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Bioinformatics Metagenomics

Full text 2024

Clonal evolution and blastic plasmacytoid dendritic cell neoplasm: malignancies of divergent hematopoietic lineages emerging from a common founding clone

Denker S, Künstner A, Schwarting J, et al.

No abstract available.

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Bioinformatics

Full text 2025

ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece)

Bolanakis G, Karakasi D, Trichas A, et al.

Dendarus foraminosus Mulsant and Rey, 1855 is a darkling beetle in the family Tenebrionidae and one of the many Dendarus species endemic to the island of Crete. Dendarus foraminosus is a commonly found species and …

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Genome Assembly

Full text 2026

Population genetics and phylogenomic insights into the origin of economically important black pepper (Piper nigrum)

Metschina D, Cauz-Santos LA, Christenhusz MJM, et al.

<h4>Premise</h4>We conducted population genetic and phylogenomic analyses of several cultivated Piper nigrum varieties and closely related species. We sought to establish (1) the genetic constitution of P. nigrum and its putative status as an allotetraploid …

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Bioinformatics

Full text 2026

Limnofasciculus delicatus (Coleofasciculaceae, Coleofasciculales), a Novel Mat-Forming Cyanobacterium From Shenandoah River, Virginia, USA

Stancheva R, Valadez-Cano C, Van Aken B, et al.

Benthic cyanobacterial mats in flowing waters are complex communities typically composed of taxa from the orders Coleofasciculales and Oscillatoriales, many of which have unresolved taxonomic positions and poorly characterized toxic potential. We collected field mats …

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Metagenomics

Full text 2026

Genomic insights into adaptations to survival and toxicity of cyanobacteria in hot springs: a study comprising cyanobacterial genomes from Europe, Iceland, and Central Asia

Khomutovska N, Rudak A, Gkelis S, et al.

<h4>Aim of the study</h4>Genomic resources for thermophilic cyanobacteria remain limited, hindering understanding of their ecology and adaptations to extreme high-temperature environments. This study characterizes the genomic features of thermophilic cyanobacteria from thermal springs, focusing on …

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Bioinformatics

Full text 2025

Sketch, capture and layout phylogenies

Huson DH.

Phylogenetic trees and networks play a central role in biology, bioinformatics, and mathematical biology, and producing clear, informative visualizations of them is an important task. We present new algorithms for visualizing rooted phylogenetic networks in …

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Bioinformatics

Full text 2025

Structural insights into thraustochytrid-specific lipases using alphafold to identify the role of GXSXG motif

Mariam I, Rova U, Christakopoulos P, et al.

<h4>Background</h4>Triacylglycerol lipases (E.C. 3.1.1.3) are serine hydrolases, universally present in animals, plants and microbes and are an integral part of lipid metabolism. They are industrially relevant enzymes that cleave ester bonds of triacylglycerides to release …

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Bioinformatics

Full text 2024

Toward the vector map in insect navigation

Wolf H.

No abstract available.

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Bioinformatics

Full text 2026

Acinetobacter uliginosus sp. nov. and Acinetobacter halobius sp. nov. isolated from soil

Ran CG, Liu FL, Wu T, et al.

Two bacterial strains, designated BSP-53T and BSP-153T, were isolated from soil samples collected from Beijing Olympic Forest Park, China. Phylogenomic reconstruction based on core genes robustly positioned the strains as two distinct evolutionary lineages within …

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Bioinformatics

Full text 2024

Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra

Zhong S, Liu X, Ma X, et al.

Holothuria scabra, a commercially valuable yet ecologically vulnerable tropical holothuroid, has experienced a severe decline in its wild populations, especially in China. Genomic resources are crucial for the development of effective genomic breeding projects and …

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Nanopore Sequencing

Full text 2024

Fundamental Patterns of Structural Evolution Revealed by Chromosome-Length Genomes of Cactophilic Drosophila

Benowitz KM, Allan CW, Jaworski CC, et al.

A thorough understanding of adaptation and speciation requires model organisms with both a history of ecological and phenotypic study as well as a complete set of genomic resources. In particular, high-quality genome assemblies of ecological …

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Bioinformatics

Full text 2026

Outbreak of dengue fever in Ghana: The emergence of DENV-1 serotype

Pratt D, Larbi YA, Ofori M, et al.

<h4>Background</h4>Dengue, a mosquito-borne virus continues to be a public health concern in the tropics and subtropical parts of Africa. Due to the increase of urbanization, climate change and trans-Atlantic trade, the transmitting vector, Aedes aegypti, …

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Bioinformatics

Full text 2025

A library of avian proteins improves palaeoproteomic taxonomic identification and reveals widespread intraspecies variability

Codlin MC, Yeomans L, Stiller J, et al.

Biomineral-associated proteins, such as those found in bone, teeth, and eggshell, have become instrumental for studying ancient life, as they often survive far longer than DNA. Harnessing advancements in avian genomics, we annotate bone and …

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Bioinformatics

Full text 2025

A Mitochondrially Related Plastidial Transporter Regulates Photosynthesis in the Diatom Phaeodactylum tricornutum

Giustini C, Dal Bo D, Storti M, et al.

Eukaryotic phototrophs depend on the activity of two engines (the plastid and the mitochondrion) to generate the energy required for cellular metabolism. Because of their overlapping functions, both activities must be closely coordinated. At the …

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Bioinformatics

Full text 2024

Plastic plastids

Nick P.

No abstract available.

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Bioinformatics

Full text 2026

Plastome Evolution in Viburnum (Adoxaceae): Comparative Genomics Reveals Hypervariable Markers and Relaxed Selection on Protein Import Genes

Mou L, Zhang Q, Zhu B, et al.

No abstract available.

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Bioinformatics

Full text 2026

Understanding the Chemosensory and Detoxification Mechanisms in the Oriental Fruit Fly, Bactrocera dorsalis

Jaffar S, Lu Y.

Bactrocera dorsalis (Hendel) is a major fruit-feeding pest that poses a severe and persistent threat to the horticulture industry in tropical and subtropical regions. Methyl eugenol (ME) is a powerful male-specific attractant phytochemical and pheromone …

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Epigenetics Transcriptomics

Full text 2025

Phylogenomic, Morphological, and Phylogenetic Evidence Reveals Five New Species and Two New Host Records of Nectriaceae (Hypocreales) from China

Fan Q, Su P, Xiao J, et al.

Fusarioid fungi, members of the Nectriaceae within the Hypocreales (Ascomycota), exhibit diverse ecological roles and possess complex phylogenetic relationships, including endophytic, saprophytic, and pathogenic lifestyles. Among them, the genera Fusarium and Neocosmospora are particularly significant …

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Bioinformatics

Browse Papers

Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum

Clonal evolution and blastic plasmacytoid dendritic cell neoplasm: malignancies of divergent hematopoietic lineages emerging from a common founding clone

ERGA-BGE genome of <i>Dendarus foraminosus</i>: an IUCN Least Concern darkling beetle endemic to Crete (Greece)

Population genetics and phylogenomic insights into the origin of economically important black pepper (Piper nigrum)

Limnofasciculus delicatus (Coleofasciculaceae, Coleofasciculales), a Novel Mat-Forming Cyanobacterium From Shenandoah River, Virginia, USA

Genomic insights into adaptations to survival and toxicity of cyanobacteria in hot springs: a study comprising cyanobacterial genomes from Europe, Iceland, and Central Asia

Sketch, capture and layout phylogenies

Structural insights into thraustochytrid-specific lipases using alphafold to identify the role of GXSXG motif

Toward the vector map in insect navigation

<i>Acinetobacter uliginosus</i> sp. nov. and <i>Acinetobacter halobius</i> sp. nov. isolated from soil

Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra

Fundamental Patterns of Structural Evolution Revealed by Chromosome-Length Genomes of Cactophilic Drosophila

Outbreak of dengue fever in Ghana: The emergence of DENV-1 serotype

A library of avian proteins improves palaeoproteomic taxonomic identification and reveals widespread intraspecies variability

A Mitochondrially Related Plastidial Transporter Regulates Photosynthesis in the Diatom Phaeodactylum tricornutum

Plastic plastids

Plastome Evolution in Viburnum (Adoxaceae): Comparative Genomics Reveals Hypervariable Markers and Relaxed Selection on Protein Import Genes

Understanding the Chemosensory and Detoxification Mechanisms in the Oriental Fruit Fly, <i>Bactrocera dorsalis</i>

Phylogenomic, Morphological, and Phylogenetic Evidence Reveals Five New Species and Two New Host Records of <i>Nectriaceae</i> (<i>Hypocreales</i>) from China