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In 2004, 59 cases of food poisoning linked to the consumption of the mushroom Pleurocybella porrigens were reported in Japan, resulting in 17 fatalities due to acute encephalopathy. In 2023, we found three components of …
Read PDF<i>Listeria monocytogenes</i> is a major foodborne pathogen causing listeriosis disease in humans. Fish is a product that can serve as a transmission source. Here we present the whole-genome sequence (WGS) of <i>L. monocytogenes</i> strain 64_37 …
Read PDFThis study reports the draft genome sequence of <i>Lacticaseibacillus paracasei</i> MSR2, a strain isolated from yogurt in Bangladesh in 2024. The genome consists of a 3,085,195 base pair chromosome assembled into 132 contigs, encoding 2,903 …
Read PDFWhite-lipped deer (Przewalskium albirostris) is the sole species in the genus Przewalskium of the Cervidae family. And it is exclusively found in the Qinghai-Tibet Plateau, where it has evolved as a specialized deer on account …
Read PDFWe present a genome assembly from a female specimen of <i>Araschnia levana</i> (Map; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 362.54 megabases and 332.31 megabases. Most of haplotype 1 …
Read PDFWe present a genome assembly from a female specimen of <i>Philonicus albiceps</i> (Dune Robberfly; Arthropoda; Insecta; Diptera; Asilidae). The genome sequence has a total length of 253.92 megabases. Most of the assembly (98.91%) is scaffolded …
Read PDF<h4>Background</h4>Tandemly repeated satellite DNAs (satDNAs) are among the most copious sequences of eukaryotic genomes. They often reside in centromeric regions, but their diversity among different organisms obscures the properties that centromere-competent satDNAs should possess.<h4>Results</h4>Here, we …
Read PDFYams (Dioscorea spp.) are a highly important class of horticultural crops, serving as a staple food for millions of people in Africa and contributing significantly to food security. They are also widely cultivated in East …
Read PDF<h4>Background</h4>With over 10,000 recognized species, birds constitute one of the most diverse and widely distributed vertebrate groups. Although avian genomics has advanced rapidly over the past decade, substantial gaps remain across the global avifauna. Filling …
Read PDFWe present a genome assembly from a male specimen of <i>Chloromyia formosa</i> (Broad Centurion soldierfly; Arthropoda; Insecta; Diptera; Stratiomyidae). The genome sequence has a total length of 790.81 megabases. Most of the assembly (98.79%) is …
Read PDFWe present a genome assembly from an individual <i>Cornu aspersum</i> (Brown garden snail; Mollusca; Gastropoda; Stylommatophora; Helicidae). The genome sequence has a total length of 2 908.45 megabases. Most of the assembly (98.95%) is scaffolded …
Read PDFWe present a genome assembly from a female specimen of <i>Bombus monticola</i> (Mountain Bumble Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence has a total length of 306.99 megabases. Most of the assembly (90.92%) is …
Read PDF<h4>Motivation</h4>High-throughput sequencing (HTS) has become an integral part of routine analysis for microbiologists. The process of sequencing dozens of samples generates vast amounts of data that cannot be annotated manually. To address this challenge, numerous …
Read PDFParupeneus biaculeatus, also known as pointed goatfish, belongs to the family Mullidae and is distinguished by its unique hyoid barbels containing sensory organs and a specialized foraging strategy, setting it apart from other fish species …
Read PDFWe present a genome assembly from a female specimen of <i>Bryotropha terrella</i> (Brown Moss-moth; Arthropoda; Insecta; Lepidoptera; Gelechiidae). The genome sequence has a total length of 756.35 megabases. Most of the assembly (99.62%) is scaffolded …
Read PDFAs an important economic and ecological fish, Amur minnow (Phoxinus lagowskii) plays a significant role in food products as well as evolutionary, ecological research. However, a high-quality chromosome-level genome of P. lagowskii is not currently …
Read PDFWe present a genome assembly from a female specimen of <i>Pseudopanthera macularia</i> (Speckled Yellow; Arthropoda; Insecta; Lepidoptera; Geometridae). The assembly contains two haplotypes with total lengths of 717.87 megabases and 650.90 megabases. Most of haplotype …
Read PDF<h4>Background</h4>The current cattle reference genome, derived from a single Hereford cow, does not capture the full spectrum of genetic diversity present within the species. Moreover, detecting structural variations (SVs ≥ 50 nucleotides long) remains challenging …
Read PDFWe present a genome assembly from a specimen of <i>Sepioteuthis lessoniana</i> (bigfin reef squid; Mollusca; Cephalopoda; Myopsida; Loliginidae). The genome sequence has a total length of 5,056.23 megabases. Most of the assembly (86.4%) is scaffolded …
Read PDF<h4>Background</h4>With the growing availability of reference-grade genome assemblies across diverse taxa, there is an increasing need for efficient and scalable tools for multi-species comparative genomics, including synteny detection. Here, we introduce ntSynt, a scalable utility …
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