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3689 results

Full text 2025

Complete genome sequencing and probiotic trait analysis of <i>Lacticaseibacillus rhamnosus</i> LR110, a human stool isolate from the NORDBIOTIC collection

Szczepankowska A, Cukrowska B, Aleksandrzak-Piekarczyk T.

We present the complete genome of <i>Lacticaseibacillus rhamnosus</i> strain LR110, a human stool isolate from the NORDBIOTIC strain collection. The genome consists of a 2,867,184-bp chromosome with 46.8% GC content. Genomic analysis revealed genes related …

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Bioinformatics
Full text 2026

&lt;i&gt;Bradyrhizobium denitrificans&lt;/i&gt; strain SoilA&lt;i&gt;,&lt;/i&gt; isolated from dryland mesquite litter soil in Arizona, USA, grows using calcium oxalate as a sole carbon source

Sonke A, Quan C, Trembath-Reichert E.

A bacterial isolate capable of utilizing calcium oxalate as its sole carbon source was isolated from desert soil to explore the role of oxalotrophy in drylands. Complete genomic sequencing and phylogenomic analysis identified the organism …

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Bioinformatics
Full text 2026

Complete genome sequence of the multidrug-resistant &lt;i&gt;Citrobacter portucalensis&lt;/i&gt; strain KOS1-1 isolated from a wastewater treatment plant

Begmatov S, Rakitin AL, Beletsky AV, et al.

The emergence of multidrug-resistant bacteria is a major concern from both epidemiological and ecological perspectives. Studying these microorganisms is crucial for developing prevention strategies. We report the complete genome sequence of the multidrug-resistant <i>Citrobacter portucalensis</i> …

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Bioinformatics
Full text 2025

Complete and draft genome sequences of &lt;i&gt;Salmonella&lt;/i&gt; Wandsworth and &lt;i&gt;Salmonella&lt;/i&gt; Stanley isolated from insect-based food products

Fischer J, Borowiak M, Frentzel H, et al.

Detection of <i>Salmonella</i> in insects is rarely described, especially in insect-based food stuff. Here, we report the genome sequences of two <i>Salmonella</i> isolates belonging to <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar (<i>S</i>.) Stanley and <i>S</i>. Wandsworth …

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Bioinformatics
Full text 2026

Phloxine B Staining is Compatible With High-Throughput DNA Barcoding of Meiofauna

Gielings RL, Foulon V, Renema W, et al.

Modern, integrative biodiversity research requires methods capable of bridging the gap between detailed morphological observations and the scalability of DNA sequencing. Integrative approaches like megabarcoding generate DNA sequences, while morphological functional data and abundance data …

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Bioinformatics
Full text 2026

Complete genomes and plasmid profiles of five &lt;i&gt;Lactococcus&lt;/i&gt; isolates from Japanese amberjack (&lt;i&gt;Seriola quinqueradiata&lt;/i&gt;) and greater amberjack (&lt;i&gt;Seriola dumerili&lt;/i&gt;) cultured in Japan

Maiga S, Ogawa R, Imajoh M.

The complete genome sequences of <i>Lactococcus garvieae</i> KN161025 and <i>Lactococcus formosensis</i> strains KN19830, KN201130, KN211206, and KU211113 were determined. Strain KN161025 contained no plasmids, whereas KN19830, KN201130, KN211206, and KU211113 carried two plasmids each.

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Bioinformatics
Full text 2026

Genomes of eight cultured microbes from soil sites in Wellesley, MA

Chao M, Chou E, Tang V, et al.

We present draft-quality genomes of eight cultured microbes isolated from two soil sites with different levels of leaf cover in Wellesley, MA. This dataset includes representatives of taxa including <i>Pedobacter</i>, <i>Bacillus</i>, <i>Paenibacillus</i>, <i>Streptomyces</i>, and <i>Flavobacterium</i>.

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Bioinformatics
Full text 2026

Complete genome sequence of &lt;i&gt;Paenibacillus polymyxa&lt;/i&gt; 19197, an endophytic bacterium isolated from the morel mushroom &lt;i&gt;Morchella importuna&lt;/i&gt;

Wu C, He L, Cai Y, et al.

We report the complete genome sequence of <i>Paenibacillus polymyxa</i> 19197, an endophyte isolated from <i>Morchella importuna</i>. The 6.93 Mb circular chromosome encodes a diverse array of carbohydrate-active enzymes (CAZymes), including 220 glycoside hydrolases, and a …

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Bioinformatics
Full text 2026

Draft genome sequence of &lt;i&gt;Staphylococcus saprophyticus&lt;/i&gt; strain Nasal Sample 2 isolated from a milkman handling cows with subclinical mastitis in Kiruhura District, Uganda

Muhwezi R, Sankarapandian V, Neel GR, et al.

We report the draft genome sequence of <i>Staphylococcus saprophyticus</i> strain of Nasal Sample 2 (NS2) isolated from a milkman handling cows with subclinical mastitis in Kiruhura District, Uganda. The assembled genome comprises 2,773,281 bp with …

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Bioinformatics