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Full text 2026

Hybrid Genome Assembly and Annotation of the Basidiomycete Fungus <i>Candolleomyces candolleanus</i> Strain CMU-8613 Using a Cost-Effective Iterative Pipeline

Villa-Villa EM, Vázquez-Garcidueñas MS, Vázquez-Marrufo G.

The recently described genus <i>Candolleomyces</i> (Basidiomycota, Agaricales, Psathyrellaceae) is now recognized as a distinct taxonomic group separate from <i>Psathyrella</i>. Currently, no fully assembled and accurately annotated genomes of <i>Candolleomyces</i> species are available, limiting our understanding …

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Bioinformatics Genome Assembly
Full text 2025

Hybrid Genome Sequencing and Comparative Analysis of Three Novel &lt;i&gt;Listeria monocytogenes&lt;/i&gt; Strains: Insights into Lineage Diversity, Virulence, Antibiotic Resistance, and Defense Systems

Pemaj V, Slavko A, Konandreas K, et al.

<i>Listeria monocytogenes</i> is a major foodborne pathogen, responsible for severe listeriosis outbreaks associated with contaminated foods. This study reports the comparative genomic analysis of three novel <i>L. monocytogenes</i> strains C5, A2D9 and A2D10, obtained from …

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Bioinformatics
Full text 2025

Draft genome sequence of &lt;i&gt;Vibrio pectenicida&lt;/i&gt; strain FHCF-3, a causative agent of sea star wasting disease in the sunflower sea star (&lt;i&gt;Pycnopodia helianthoides&lt;/i&gt;), reveals the genetic potential to produce aerolysin-like toxins

Zhong KX, Chan AM, Prentice MB, et al.

Here, we report the genomic sequence of <i>Vibrio pectenicida</i> strain FHCF-3, isolated from the coelomic fluid of a sunflower sea star (<i>Pycnopodia helianthoides</i>) showing signs of wasting disease. The draft genome is 4,368,354 bp with …

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Bioinformatics
Full text 2025

Complete genome sequences of &lt;i&gt;Alkalilimnicola ehrlichii&lt;/i&gt; strain SGAR-12 isolated from a pilot-scale haloalkaline biodesulfurization installation and type strain &lt;i&gt;A. ehrlichii&lt;/i&gt; MLHE&lt;sup&gt;T&lt;/sup&gt;

Plugge CM, Gupta S, Garcia Villa S, et al.

The sulfide-oxidizing bacterium <i>Alkalilimnicola ehrlichii</i> strain SGAR-12 was isolated from a pilot-scale haloalkaline biodesulfurization (BD) installation, and its genome was sequenced. Additionally, the genome of the type strain of the species, strain MLHE<sup>T</sup>, was sequenced. …

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Bioinformatics
Full text 2026

Use of &lt;i&gt;Ligilactobacillus salivarius&lt;/i&gt; SP36 as an Adjunct Culture by an Artisan Dairy and Isolation of New Autochthonous Strains with Technological Potential for Cheesemaking

Jara J, Alba C, Calzada J, et al.

Artisanal cheese quality relies on a complex microbiota. The generalized use of commercial starter cultures has been associated with reduced microbial diversity, fueling interest in using indigenous lactic acid bacteria (LAB) as adjunct cultures. This …

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Bioinformatics
Full text 2025

Draft genome sequences of two &lt;i&gt;Thioalkalivibrio sulfidiphilus&lt;/i&gt; strains isolated from a pilot-scale haloalkaline biodesulfurization installation

Plugge CM, Gupta S, Garcia Villa S, et al.

The genome sequences of two <i>Thioalkalivibrio sulfidiphilus</i> strains, SGAR-7 and SGAR-13, isolated from a pilot-scale haloalkaline biodesulfurization (BD) installation, are reported. The genomes comprise Flavocytochrome c sulfide dehydrogenase and SoxAX cytochromes, which are essential for …

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Bioinformatics
Full text 2026

Characterization of Antimicrobial Resistance and Potential Zoonotic Risk in Uropathogenic &lt;i&gt;Escherichia coli&lt;/i&gt; Isolated from Companion Animals, with Genomic Analysis of Virulence Determinants in a Representative Isolate

DeZoysa AR, Kwan M, Edison LK, et al.

Uropathogenic <i>Escherichia coli</i> (UPEC) is a leading cause of urinary tract infections (UTIs) in companion animals. This study characterized 42 UPEC isolates recovered from dogs and cats at the University of Florida, College of Veterinary …

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Bioinformatics