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The Y chromosome's unique structure poses challenges for cytogenetic studies, especially in designing probes for FISH Oligopaint labeling experiments (Fluorescence in situ hybridization). The standard protocol for designing probes for these experiments discards repetitive sequences …
Read PDFOBJECTIVES: The genus Microbacterium contains bacteria ubiquitously distributed in various environments and includes plant-associated bacteria able to colonize the tissue of agricultural crop plants. The objective of this work was to complete the genome sequence …
Read PDFWe present a genome assembly from a specimen of <i>Arabis hirsuta</i> (Hairy rockcress; Streptophyta; Magnoliopsida; Brassicales; Brassicaceae). The assembly contains two haplotypes with total lengths of 582.67 megabases and 576.85 megabases. Most of haplotype 1 …
Read PDFThis study presents three genome assemblies within the <i>Capsicum</i> genus, enabling comprehensive comparative analyses for the <i>Annuum</i> and <i>Baccatum</i> complexes within the genus. We produced highly continuous assemblies of the nuclear genomes and complete chloroplast …
Read PDF<i>Mixta calida</i>, formerly known as <i>Pantoea calida</i>, is a motile Gram-negative, facultatively anaerobic bacterium with coccoid rod morphology. Although previously considered non-pathogenic, emerging case studies indicate its potential role in causing serious infections, including bacteraemia, …
Read PDF<i>Cucumis sativus</i> L., commonly known as cucumber, is an important vegetable crop worldwide, with China as the largest producer, particularly of the North and South China types. While extensive genomic research has focused on the …
Read PDFWe present a genome assembly from a male specimen of <i>Arctia caja</i> (Garden Tiger; Arthropoda; Insecta; Lepidoptera; Erebidae). The assembly contains two haplotypes with total lengths of 700.59 megabases and 699.20 megabases. Most of haplotype …
Read PDF<h4>Motivation</h4>Raw nanopore signal analysis is a common approach in genomics to provide fast and resource-efficient analysis without translating the signals to bases (i.e. without basecalling). However, existing solutions cannot interpret raw signals directly if a …
Read PDFEucalyptus globulus Labill. is the primary plant material used for the extraction of eucalyptus oil. For this study, we generated a chromosome-level genome assembly of E. globulus using a combination of HiFi long-reads, Illumina short-reads …
Read PDFBarbodes wynaadensis, a unique cyprinid species native to Yunnan Province in China, stands out as an allotetraploid (AABB) fish with a complex evolutionary history. Leveraging a multi-platform sequencing strategy combining MGI short-read, PacBio long-read, and …
Read PDFWe report the complete genome sequence of <i>Slackia exigua</i> SB208, isolated from the resected tumor tissue of a treatment-naïve patient with colorectal cancer. This genome is composed of a single chromosome that is approximately 2 …
Read PDF<h4>Motivation</h4>Ancestry information is essential to large cohort studies but is often unavailable or inconsistently measured. For studies involving genome sequencing, existing ancestry prediction methods are constrained by computational demands and complex input requirements. Efficient, scalable …
Read PDFWe present a genome assembly from a specimen of <i>Abramis brama</i> (bronze bream; Chordata; Actinopteri; Cypriniformes; Leuciscidae). The genome sequence has a total length of 1 108.20 megabases. Most of the assembly (99.13%) is scaffolded …
Read PDFWe present a genome assembly from a female specimen of <i>Argynnis paphia</i> (Silver-washed Fritillary; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 520.88 megabases and 444.74 megabases. Most of haplotype …
Read PDFSpinibarbus caldwelli is an economically important freshwater species within the Cyprinidae family, abundant in the middle and lower reaches of the Yangtze River and its adjacent basins. As a promising species suitable for aquaculture in …
Read PDFWe present a genome assembly from a specimen of <i>Nanogona polydesmoides</i> (eyed flat-backed millipede; Arthropoda; Diplopoda; Chordeumatida; Craspedosomatidae). The genome sequence has a total length of 406.26 megabases. Most of the assembly (95.49%) is scaffolded …
Read PDFWe present a genome assembly from a female specimen of <i>Erebia meolans</i> (Piedmont Ringlet; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 512.88 megabases and 439.35 megabases. Most of haplotype …
Read PDFThe gold barb (Barbodes semifasciolatus), a member of the Cyprinidae family, exhibits remarkable adaptability to highly acidic environments, making it an ideal model for studying extreme environmental adaptation. However, its genome has not been previously …
Read PDFWe present a genome assembly from a female specimen of <i>Platystomos albinus</i> (fungus weevil; Arthropoda; Insecta; Coleoptera; Anthribidae). The assembly contains two haplotypes with total lengths of 555.31 megabases and 554.55 megabases. Haplotype 1 is …
Read PDFWe present a genome assembly from a male specimen of <i>Troilus luridus</i> (Bronze Shieldbug; Arthropoda; Insecta; Hemiptera; Pentatomidae). The assembly contains two haplotypes with total lengths of 1,044.50 megabases and 842.58 megabases. Most of haplotype …
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