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10297 results

Full text 2025

The genome sequence of the Slender-footed Robberfly, <i>Leptarthrus brevirostris</i> (Meigen, 1804)

Wolton R, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, et al.

We present a genome assembly from a female specimen of <i>Leptarthrus brevirostris</i> (Slender-footed Robberfly; Arthropoda; Insecta; Diptera; Asilidae). The assembly contains two haplotypes with total lengths of 850.81 megabases and 851.46 megabases. Most of haplotype …

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Genome Assembly
Full text 2025

The genome sequence of the Small Sallow Mining Bee, &lt;i&gt;Andrena praecox&lt;/i&gt; (Scopoli, 1763)

Crowley LM, University of Oxford and Wytham Woods Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, et al.

We present a genome assembly from a female specimen of <i>Andrena praecox</i> (Small Sallow Mining Bee; Arthropoda; Insecta; Hymenoptera; Andrenidae). The genome sequence has a total length of 563.05 megabases. The assembly is scaffolded into …

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Genome Assembly
Full text 2025

White paper: standards for handling and analyzing plant pan-genomes

Heuermann MC, Barros P, Beier S, et al.

Plant pan-genomes, which aggregate genomic sequences and annotations from multiple individuals of a species, have emerged as transformative tools for understanding genetic diversity, adaptation, and evolutionary dynamics. Super-pan-genomes, extending across species boundaries, further enable comparative …

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Bioinformatics
Full text 2025

The genome sequence of the Tansy Beetle, &lt;i&gt;Chrysolina graminis&lt;/i&gt; (Linnaeus, 1758)

Oxford GS, Natural History Museum Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, et al.

We present a genome assembly from a female specimen of <i>Chrysolina graminis</i> (Tansy Beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The assembly contains two haplotypes with total lengths of 1,467.20 megabases and 1,455.42 megabases. Most of haplotype …

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Genome Assembly
Full text 2026

Chromosome-level genome and transcriptome analysis of &lt;i&gt;Trichophyton verrucosum&lt;/i&gt; reveals pathogenicity mechanisms and antifungal response

Tahir MS, Ma X, Gu Y, et al.

<i>Trichophyton verrucosum</i> is a zoophilic dermatophyte and the primary cause of bovine dermatophytosis, a contagious and economically significant skin disease with zoonotic potential. Despite its importance, high-quality genomic and transcriptomic resources for this species remain …

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Genome Assembly Transcriptomics
Full text 2025

The genome sequence of the Ibiza wall lizard, &lt;i&gt;Podarcis pityusensis&lt;/i&gt; (Boscá, 1883)

Feiner N, Uller T, de la Cruz F, et al.

Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacertinae; <i>Podarcis</i>; <i>Podarcis pityusensis</i> (Boscá, 1883) (NCBI:txid74359).

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Bioinformatics
Full text 2025

The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruses causing Cassava brown streak disease unveils a region of highly repeated elements on chromosome 12

Thoben C, Pucker B, Winter S, et al.

Cassava (Manihot esculenta Grantz) is a vital staple crop for millions of people, particularly in Sub-Saharan Africa, where it is a primary source of food and income. However, cassava production is threatened by several viral …

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Genome Assembly Structural Variants
Full text 2025

The genome sequence of the White-barred Clearwing, &lt;i&gt;Synanthedon spheciformis&lt;/i&gt; (Denis &amp; Schiffermüller), 1775 (Lepidoptera: Sesiidae)

Pohjoismaki J, Mutanen M, Wright CJ, et al.

We present a genome assembly from a female specimen of <i>Synanthedon spheciformis</i> (White-barred Clearwing; Arthropoda; Insecta; Lepidoptera; Sesiidae). The assembly contains two haplotypes with total lengths of 388.57 megabases and 372.40 megabases. Most of haplotype …

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Genome Assembly
Full text 2025

GoldPolish-target: targeted long-read genome assembly polishing

Zhang E, Coombe L, Wong J, et al.

<h4>Background</h4>Advanced long-read sequencing technologies, such as those from Oxford Nanopore Technologies and Pacific Biosciences, are finding a wide use in de novo genome sequencing projects. However, long reads typically have higher error rates relative to …

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Nanopore Sequencing