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We present a genome assembly from an individual female <i>Xestia castanea</i> (Neglected Rustic; Arthropoda; Insecta; Lepidoptera; Noctuidae). The assembly contains two haplotypes with total lengths of 721.78 megabases and 685.53 megabases. Most of haplotype 1 …
Read PDFColeoid cephalopods, a subclass of mollusks that includes octopuses, cuttlefish, and squid, exhibit sophisticated biological features, such as dynamic and neurally driven camouflage behavior, inter-individual communication, single-lens camera-like eyes, the largest brains among invertebrates, and …
Read PDFThe crickets, Gryllus bimaculatus is a nutritionally valuable insect widely utilized in agricultural production as a high-quality protein source and an emerging resource species. However, the absence of a sequenced genome has limited exploration of …
Read PDFWe present a haploid genome assembly from an individual male <i>Andrena scotica</i> (chocolate mining bee; Arthropoda; Insecta; Hymenoptera; Andrenidae). The genome sequence has a total length of 446.96 megabases. Most of the assembly (80.96%) is …
Read PDF<h4>Motivation</h4>Short-read sequencing data can be affected by alignment artifacts in certain genomic regions. Removing reads overlapping these exclusion regions, previously known as Blacklists, help to potentially improve biological signal. Alternatively, "sponge" or decoy sequences have …
Read PDFNeoseiulus longispinosus is a predatory mite (Phytoseiidae) widely used in the biological control of agricultural pests, such as Tetranychus mites, Eriophyes mites and Oligonychus mites, in tropical and subtropical regions in China. It shows strong …
Read PDF<h4>Motivation</h4>Advances in sequencing technologies have enabled researchers to sequence whole genomes rapidly and cheaply. However, despite improvements in genome assembly, structural genome annotation (i.e. the identification of protein-coding genes) remains challenging, particularly for eukaryotic genomes. …
Read PDFPsammosilene tunicoides, a medicinal plant with significant anti-inflammatory and analgesic properties, is currently classified in China as a Vulnerable species and a Grade II Protected Wild Plant. In this study, a chromosome-level de novo genome …
Read PDFWe present a genome assembly from an individual female <i>Trypoxylon clavicerum</i> (Club-Horned Wood Borer Wasp; Arthropoda; Insecta; Hymenoptera; Crabronidae). The genome sequence has a total length of 270.89 megabases. Most of the assembly (85.18%) is …
Read PDFTofieldia thibetica is a species native to Southwest China. It holds an important phylogenetic position as one of the earliest-diverging lineages within monocots. Here we report a chromosome-level genome assembly of T. thibetica, assembled using …
Read PDFWe present a genome assembly of <i>Heligmosomum mixtum</i> (Nematoda; Chromadorea; Rhabditida; Heligmosomidae). The assembly consists of two haplotypes with total lengths of 741.91 megabases and 754.62 megabases. Most of haplotype 1 (98.33%) is scaffolded into …
Read PDFWe present a genome assembly from an individual female <i>Pipistrellus nathusii</i> (Nathusius' pipistrelle; Chordata; Mammalia; Chiroptera; Vespertilionidae). The assembly contains two haplotypes with total lengths of 1 961.71 megabases and 1 889.00 megabases. Most of …
Read PDFWe present a genome assembly from an individual male <i>Miniopterus schreibersii</i> (Schreibers's Long-fingered Bat; Chordata; Mammalia; Chiroptera; Miniopteridae). The assembly contains two haplotypes with total lengths of 1 850.57 megabases and 1 699.63 megabases. Most …
Read PDFWe present a genome assembly of <i>Geranium rotundifolium</i> (Roundleaf geranium; Streptophyta; Magnoliopsida; Geraniales; Geraniaceae). The genome sequence has a total length of 497.00 megabases. Most of the assembly (97.57%) is scaffolded into 13 chromosomal pseudomolecules. …
Read PDFSaussurea hypsipeta Diels, a perennial medicinal plant used in traditional Chinese medicine, is primarily distributed on the Qinghai-Tibet Plateau, where it serves as a key component of the alpine ecosystem. The lack of genetic information …
Read PDFYaoshania pachychilus (Gastromyzontidae, Cypriniformes) is a benthic species inhabiting torrential mountain streams, where it attaches to rocks using adhesive pelvic and pectoral fins. Its juvenile black-white coloration has made it popular in the ornamental fish …
Read PDFWith the current speed of sequencing, there is a desire for standardized and automated genome assembly and annotation to produce high-quality genomes as input for comparative (pan)genomics. Therefore, we created a convenience pipeline using existing …
Read PDF<i>Quercus oxyphylla</i> (E. H. Wilson) Hand.-Mazz. is a threatened evergreen subalpine tree species with fragmented habitats native to China. Here, we present a de novo chromosome-level genome assembly of this oak species by integrating PacBio …
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