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Invasive species are one of the biggest drivers of species extinction. <i>Ludwigia grandiflora</i> subsp. <i>hexapetala</i> (<i>Lgh</i>) is widely invasive in aquatic ecosystems of Europe, North America, and Japan, and also colonizes emergent freshwater soils, but …
Read PDFDecorus tungting is a vulnerable, endemic cyprinid species of conservation significance, historically abundant in Dongting Lake but now suffering severe population declines due to overfishing and river modifications. However, no genome assembly has been reported …
Read PDFAlthough an increasing number of long-read genome assemblies have been created from a diverse collection of dogs and wolves, most published assemblies represent the diploid genome as a single primary sequence. Here, we generate and …
Read PDFSo far, the chromosome-level genome assembly of only one species has been known for the family Agromyzidae. The vegetable leafminer, Liriomyza sativae Blanchard, 1938, is a highly polyphagous invasive pest that poses a significant threat …
Read PDFAccurate and complete <i>de novo</i> genome assemblies enable variant identification and the discovery of novel genomic features and biological functions. However, <i>de novo</i> assemblies of large and complex genomes remain challenging. Long-read sequencing data, alone …
Read PDF<h4>Objectives</h4>Verticillium albo-atrum is one of the most dangerous quarantine pathogen, which is a soil-borne pathogen known for causing verticillium wilt, a disease that affects a wide range of plants, including many economically important crops. However, …
Read PDF<i>Citrus</i> species are economically and nutritionally vital, with their fruits cultivated globally. Despite the publication of multiple genomes for <i>Citrus</i>, high-quality assemblies that achieve both haplotype resolution and telomere-to-telomere (HR-T2T) continuity remain scarce-pummelo (<i>Citrus maxima</i>) …
Read PDFThe marble goby (Oxyeleotris marmorata) is an important aquaculture species in South China and Southeast Asia due to its strong adaptability and rapid growth rate. However, the lack of comprehensive genomic resources has hindered in-depth …
Read PDFLithachne pauciflora is a herbaceous bamboo species characterized by its short height, low degree of lignification, and dimorphic florets, making it a special model for studying the key trait evolution in bamboo. Here, we assembled …
Read PDFMonochamus sutor (Coleoptera: Cerambycidae) is a pest that has led to significant economic and ecological losses. Herein, we created a high-quality chromosome-level reference genome for M. sutor by integrating MGI, Nanopore, and Hi-C sequencing technologies. …
Read PDF<h4>Motivation</h4>Accurate genome size estimation is an important component of genomic analyses such as assembly and coverage calculation, though existing tools are primarily optimized for short-read data.<h4>Results</h4>We present LRGE, a novel tool that uses read-to-read overlap …
Read PDFTriplophysa pappenheimi, an ecologically important species within the plateau freshwater ecosystem, predominantly inhabits the rapids of the upper Yellow River, its tributaries, and associated lakes, playing a crucial role in maintaining local aquatic biodiversity and …
Read PDFAs an agar-producing red seaweed, Gracilaria vermiculophylla plays a significant role in the food industry as well as in multiple fields, including evolutionary studies, genetic diversity analysis, and ecological research. However, a high-quality chromosome-level genome …
Read PDFFraxinus mandshurica Rupr, an important timber species, is widely distributed throughout northeastern China. In our study, we assembled the telomere-to-telomere (T2T) genome of F. mandshurica, generated by using Illumina short-read, PacBio HiFi long-read and Hi-C …
Read PDFTrichomonas vaginalis is a flagellated protozoan parasite and the causative agent of trichomoniasis, the most prevalent non-viral sexually transmitted infection, with significant impact on public health and economy. Here, we present a chromosome-level genome of …
Read PDFThe parrotfish, Scarus rivulatus, is a widely distributed herbivorous species, that helps maintain reef resilience by controlling algal growth. However, overfishing and reef degradation threaten its populations, and the lack of genomic resources limits studies …
Read PDFOyster pompano (Trachinotus anak) is currently the highest-yielding marine aquaculture fish species in China. However, previously available genome assemblies were fragmented and incomplete, hindering advances in genomic research and breeding applications. Here, we generated two …
Read PDFThe Black Redstart (Phoenicurus ochruros) is one of the most widely distributed species, occupying diverse habitats and exhibiting altitudinal migration (0-3700 m), making it suitable model for studying altitudinal migration and high-altitude adaptation. In this …
Read PDFThe well-known striped catfish (Pangasianodon hypophthalmus), belonging to the order Siluriformes and the family Pangasiidae, has become an important freshwater economic fish species due to its outstanding growth performance, environmental adaptability and disease resistance. In …
Read PDFParacondylactis sinensis is a burrowing sea anemone inhabiting soft sediments along the Chinese coast, representing an ecologically and economically important actiniarian species. Despite its unique adaptations to hypoxia and sediment-associated stressors, genomic resources for burrowing …
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