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The wild relatives of cultivated rice (Oryza sativa L.) represent largely untapped sources of novel genetic material for crop improvement. Here, we present a chromosome-level, haplotype-resolved genome for O. australiensis, an Australian wild rice relative, …
Read PDFWe report the first draft genome sequence of <i>Ovulinia azaleae</i> (strain CBS 680.88). The long-read assembly resulted in a 56.83 Mb genome with an N50 of 3.05 Mb and 10,707 predicted protein-coding genes. The high-quality …
Read PDFThe African turquoise killifish, Nothobranchius furzeri, is an emerging model for functional genomics research. Interest in N. furzeri stems from its extremely short lifespan, and the breadth of research on this fish is rapidly expanding. …
Read PDF<h4>Background</h4>Soil salinization threatens global rice production, driving the urgent need for salt-tolerant rice cultivars. Sea rice HD961, renowned for its exceptional salt tolerance, serves as an ideal model for elucidating molecular adaptations to salinity.<h4>Results</h4>In this …
Read PDFChrysoperla zastrowi sillemi is an extensively employed bio-control agent against crop pests. However, the genomic information on adaptive evolution and predator-prey interaction was lacking to enhance its predatory potential. Here, we presented a high contiguity, …
Read PDF<h4>Objective</h4>Staphylococcus capitis is part of the human microbiome and an opportunistic pathogen known to cause catheter-associated bacteraemia, prosthetic joint infections, skin and wound infections, among others. Detection of S. capitis in normally sterile body sites …
Read PDF<h4>Background</h4>Advanced long-read sequencing technologies, such as those from Oxford Nanopore Technologies and Pacific Biosciences, are finding a wide use in de novo genome sequencing projects. However, long reads typically have higher error rates relative to …
Read PDFWe present the genome sequence of <i>Pediococcus pentosaceus</i> 13.7 13A-2, isolated from a Jersey dairy cow from a conventionally managed dairy farm in Münsterland, Germany. The circular chromosome comprises 1.77 Mbp and 1,686 predicted protein-coding …
Read PDFWhite bream Parabramis pekinensis is an omnivorous fish belong to Cyprinidae that is widespread in Asia. In this study, we presented chromosome-level genome assemblies of P. pekinensis by using PacBio HiFi long reads and Hi-C …
Read PDFHumphead wrasse, Cheilinus undulatus, is an endangered fish species with high economic and ecological value as well as natural sex change from female to male, while sexual selection occurs in breeding aggregations. In our present …
Read PDFElsholtzia splendens, a perennial herb native to East Asia, is valued for its ornamental and medicinal uses, particularly in treating inflammatory and febrile conditions. Recent studies have highlighted its antibacterial, anti-inflammatory, antidepressant, antithrombotic, and lipid-lowering …
Read PDF<i>Mixta calida</i>, formerly known as <i>Pantoea calida</i>, is a motile Gram-negative, facultatively anaerobic bacterium with coccoid rod morphology. Although previously considered non-pathogenic, emerging case studies indicate its potential role in causing serious infections, including bacteraemia, …
Read PDFEucalyptus globulus Labill. is the primary plant material used for the extraction of eucalyptus oil. For this study, we generated a chromosome-level genome assembly of E. globulus using a combination of HiFi long-reads, Illumina short-reads …
Read PDFBarbodes wynaadensis, a unique cyprinid species native to Yunnan Province in China, stands out as an allotetraploid (AABB) fish with a complex evolutionary history. Leveraging a multi-platform sequencing strategy combining MGI short-read, PacBio long-read, and …
Read PDFSpinibarbus caldwelli is an economically important freshwater species within the Cyprinidae family, abundant in the middle and lower reaches of the Yangtze River and its adjacent basins. As a promising species suitable for aquaculture in …
Read PDFTritrichomonas musculus is a commensal protist colonizing the large intestine of laboratory mice. Parasite colonization reshapes the gut microbiome and modulates mucosal immunity. This parasite is refractory to axenic culture. In order to facilitate functional …
Read PDFAdvances in sequencing technologies have enabled the determination of genome sequences of multiple lines within a single species. Comparative analysis of multiple genome sequences reveals all genes present within a species, providing insight into the …
Read PDFArabica coffee (Coffea arabica) dominates global coffee production, accounting for over 60% of the world's coffee trade. The Mundo Novo cultivar, predominantly grown in Yunnan, China, represents a significant germplasm resource. However, the absence of …
Read PDFGenome-editing technology has advanced significantly since the 2020 Nobel Prize in Chemistry was awarded for the development of clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein 9 (Cas9). While CRISPR-Cas9 has become widely …
Read PDFPhyllostachys violascens 'Prevernalis' is one of the best species for shoots, and the Prevernalis shoots are widely favored by people for its high nutritional value, high medicinal value and delicious taste. However, high-quality reference genome …
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