Full text 2026

<i>scellop:</i> a scalable redesign of cell population plots for single-cell data

Smits TC, Akhmetov N, Liaw TS, et al.

Full text

Loading PDF… Expand reader Download

Abstract

<h4>Summary</h4>Cell population plots are visualizations showing cell population distributions in biological samples with single-cell data, traditionally shown with stacked bar charts. Here, we address issues with this approach, particularly its limited scalability with increasing number of cell types and samples, and present <i>scellop</i>, a novel interactive cell population viewer combining visual encodings optimized for common user tasks in studying populations of cells across samples or conditions.<h4>Availability and implementation</h4><i>scellop</i> is available under the MIT licence at https://github.com/hms-dbmi/scellop, and is available on PyPI (https://pypi.org/project/scellop/) and NPM (https://www.npmjs.com/package/scellop). A demo is available at https://scellop.netlify.app/.