Full text 2026

Identify contaminants with decontam on the QIIME 2 Framework

Rabasco JT, Bolyen E, Caporaso JG, et al.

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Abstract

Here, we present the integration of the decontam method for contaminant identification and a supplemental approach for identifying the source of contaminants in sequencing data within the QIIME 2 Framework for microbiome data science. We demonstrate its use in a tutorial based on the QIIME 2 "Moving Pictures Tutorial" data.

Keywords

Contamination metagenome Microbiome Amplicon Decontam Qiime 2