Draft genome sequences of the pathogenic fungi <i>Scedosporium aurantiacum</i> and <i>Scedosporium apiospermum</i> from clinical isolates

<i>Scedosporium</i> species are filamentous fungi with inherent broad antifungal resistance that pose opportunistic infection threats. We present draft genome assemblies of <i>S. aurantiacum</i> (11 contigs) and <i>S. apiospermum</i> (9 contigs), derived from Oxford Nanopore sequencing of one Australian clinical isolate each.