Full text 2025

A trio-binned, haplotype-resolved genome sequence of the zebrafish, <i>Danio rerio</i> Hamilton 1822, SAT strain

Howe K, Rhie A, Koren S, et al.

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Abstract

We present the trio-binned, haplotype-resolved genome assemblies (released in 2020) of both haplotypes of an individual of the <i>Danio rerio</i> SAT strain, a cross between Tuebingen (maternal) and AB (paternal) strains (zebrafish; Chordata; Actinopteri; Cypriniformes; Cyprinidae). The genome sequence of the paternal haplotype (fDreABH1) is 1,354.1 megabases long, while the genome sequence of the maternal haplotype (fDreTuH) is 1,360.5 megabases long. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.6 kilobases in length.

Keywords

Cypriniformes Zebrafish Chromosome-scale Phased Assembly Haplotype-resolved Genome Danio Rerio Sat Strain Trio-Binned Assembly