Browse Papers

Search the literature by keyword, topic, or author. Filter to articles with full text available.

10021 results

Full text 2026

A postoperative recurrence prediction model for intrahepatic cholangiocarcinoma based on multi-omics analysis of adjacent-to-tumor tissues

Ping R, Zhao Q, Ma W, et al.

<h4>Background</h4>The patients with intrahepatic cholangiocarcinoma (iCCA) are highly susceptible to recurrence after radical resection, while predicting recurrence remains challenging. Adjacent-to-tumor tissues (ATTs), as the main microenvironment for postoperative recurrence, exhibited superior predictive value for recurrence …

Read PDF
Bioinformatics
Full text 2026

Pepsin Digestion for Proteomic Studies of the Human Hair Shaft

Yee DH, Mukhtarov R, Sharma AD, et al.

<h4>Rationale</h4>Human hair shafts have received increased research interest owing to their easy accessibility and potential as a window for human health. Because the most abundant component in hair is protein, proteomics is a promising tool …

Read PDF
Bioinformatics
Full text 2026

From cell lines to the clinic: identifying a urinary BlCa-EV signature through comparative proteomics of bladder cancer lysates and extracellular vesicles

Lourenço C, Constâncio V, Tavares NT, et al.

<h4>Background</h4>There is an urgent need for the development of innovative diagnostic and therapeutic strategies in bladder cancer (BlCa) management, due to its significant incidence, mortality, and morbidity. Extracellular vesicles (EVs) constitute promising candidates as biomarkers, …

Read PDF
Bioinformatics
Full text 2026

Genotype-Phenotype Discordance in Cardiomyopathies: Pathophysiology, Clinical Expression, and Therapeutic Considerations

Nazir A, Sarwar AH, Nazar R, et al.

<h4>Background</h4>Cardiomyopathies encompass a spectrum of myocardial disorders often attributed to underlying genetic mutations. However, genotype-phenotype discordance where the genetic profile does not align with the expected clinical presentation poses significant diagnostic, prognostic, and therapeutic challenges.<h4>Objective</h4>To …

Read PDF
Bioinformatics
Full text 2026

Prediction of genetic relatedness of &lt;i&gt;Escherichia coli&lt;/i&gt; using neighbor typing: a tool for rapid outbreak detection

Carroll AC, Mortimer L, Ghosh H, et al.

Identifying the genetic relatedness of resistant bacterial pathogens in healthcare settings can help identify undetected transmission events and outbreaks. However, current methods are time- and resource-intensive. We evaluated a rapid neighbor typing method paired with …

Read PDF
Metagenomics Nanopore Sequencing
Full text 2026

Genomic and plasmid profiles of multidrug-resistant &lt;i&gt;Salmonella&lt;/i&gt; isolates from pediatric patients from Zhuhai, China

Chen Y, Fang Y, Huang K, et al.

Multidrug-resistant <i>Salmonella</i> has been classified as a pathogen of high priority. However, limited or mixed-quality studies reported multidrug-resistant <i>Salmonella</i> strains from pediatric patients. The study aimed to investigate the prevalence, serotypes, antimicrobial characteristics, and plasmid …

Read PDF
Bioinformatics Nanopore Sequencing
Full text 2026

The 1000 Chinese Pangenome empowers medical and population genetics

Wang Y, Duan Z, Chen D, et al.

Pangenomes are revolutionizing our ability to resolve genomic regions with complex variations<sup>1</sup>. However, existing human pangenomes<sup>2,3</sup>, constrained by small sample sizes, provide limited utility for medical and population genetic applications. Here we generated 1,116 diploid …

Read PDF
Structural Variants
Full text 2026

Application of Long-Read Whole-Genome Sequencing to Clarify Genotypic-Phenotypic Discrepancies in Methicillin-Resistant &lt;i&gt;Staphylococcus aureus&lt;/i&gt;

Jhang JH, Ahn K, Kim D, et al.

<b>Background/Objectives</b>: The Korean Global Antimicrobial Resistance Surveillance System monitors bloodstream <i>Staphylococcus aureus</i> infections by combining antimicrobial susceptibility testing (AST) with conventional polymerase chain reaction (PCR). Considering the clinical significance of methicillin-resistant <i>S. aureus</i> (MRSA), we …

Read PDF
Nanopore Sequencing
Full text 2026

Characterization and comparative analysis of the complete mitochondrial genome of &lt;i&gt;Ferula sinkiangensis&lt;/i&gt; (K. M. Shen, 1975) (Apiales: Apiaceae)

Deng X, Fan C, Song W, et al.

This study presents the first complete mitochondrial genome of <i>Ferula sinkiangensis</i>, a medicinal plant formally recognized in the Chinese Pharmacopoeia since 1977. The assembled mitogenome is 416,958 bp in length, encoding 97 genes, and exhibits …

Read PDF
Nanopore Sequencing Transcriptomics