Browse Papers

Search the literature by keyword, topic, or author. Filter to articles with full text available.

10021 results

Full text 2026

Transcriptome-based Deep Learning Model for Predicting Gemcitabine and Cisplatin Chemotherapy Response in Urothelial Carcinoma: Development and External Validation

Kang J, Lee HJ, Oh SB, et al.

<h4>Background/aim</h4>Chemotherapy with gemcitabine and cisplatin remains the cornerstone of treatment for advanced urothelial carcinoma (UC), yet response rates vary significantly among patients. Predicting treatment response is crucial to avoid unnecessary toxicity and optimize therapeutic strategies. …

Read PDF
Transcriptomics
Full text 2026

Draft genome sequences of &lt;i&gt;Lactococcus petauri&lt;/i&gt; isolated from Nile tilapia (&lt;i&gt;Oreochromis niloticus&lt;/i&gt;) and rainbow trout (&lt;i&gt;Oncorhynchus mykiss&lt;/i&gt;) in Mexican farms

Matínez-Matus E, Ortega-Santana C, Avendaño-Herrera R.

<i>Lactococcus petauri</i> is an emerging fish pathogen linked to septicemia. We report draft genome sequences of two <i>L. petauri</i> isolates from independent lactococcosis outbreaks in Mexican fish farms. This study confirms <i>L. petauri</i> presence in …

Read PDF
Bioinformatics
Full text 2026

Single-Cell Transcriptomic Atlas Reveals Metabolic Reprogramming and Transdifferentiation Trajectories in Tubular Epithelial Cells During Chronic Kidney Disease Progression

Mao X, Wei M, Li Y, et al.

<h4>Background</h4>In chronic kidney disease (CKD), there is evidence of loss of function and fibrosis in the progression of tubular epithelial cells; however, the cellular heterogeneity and underlying molecular mechanisms are not well defined. Knowledge of …

Read PDF
Transcriptomics
Full text 2026

Complete &lt;i&gt;de novo&lt;/i&gt; assembly of &lt;i&gt;Wolbachia&lt;/i&gt; endosymbiont of contemporary &lt;i&gt;Drosophila simulans&lt;/i&gt; using long-read genome sequencing

Jacobs J, Lum A, Mina E, et al.

We present a contemporary high-quality, complete <i>de novo</i> assembly of <i>Wolbachia pipientis</i> (<i>w</i>Ri Merrill 23, OZ411647), an alphaproteobacterial endosymbiont of <i>Drosophila simulans (D. simulans)</i>. This assembly was generated using long-read sequencing of <i>w</i>Ri-infected <i>D. simulans</i> …

Read PDF
Nanopore Sequencing
Full text 2025

Role of nursing and midwifery in mainstreaming genomics in Australia: mixed-methods study exploring scope of practice and strategies for implementation

Alexander KE, Farley MJ, Scanlon B, et al.

<h4>Background</h4>The integration of genomics into Australian health services offers significant benefits for the diagnosis and delivery of targeted treatments, but its success relies on a workforce equipped to deliver genomic-informed care. Nurses and midwives, Australia's …

Read PDF
Bioinformatics
Full text 2026

m6A Methyltransferase METTL3 Regulates Inflammatory and Immune Microenvironments in Renal Cell Carcinoma via Modulation of the PI3K/AKT Pathway

Cheng T, Xu W, Zha Z, et al.

<h4>Objective</h4>The involvement of methyltransferase-like 3 (METTL3, an m6A methyltransferase) and the PI3K/AKT pathway in tumor progression and immune regulation remains poorly understood. This study investigates whether METTL3 influences the immune microenvironment of renal cell carcinoma …

Read PDF
Bioinformatics Epigenetics
Full text 2026

The Electronic Medical Records and Genomics study: Design and analytic framework for assessing the impact of genome-informed risk assessments

Limdi N, Beasley TM, Cortopassi J, et al.

The Electronic Medical Records and Genomics (eMERGE) Network developed and implemented a genome-informed risk assessment (GIRA) to communicate genomic (polygenic risk scores [PRSs], integrated risk scores [IRSs], and monogenic results), clinical, and family history-based risk …

Read PDF
Bioinformatics
Full text 2026

Transcriptomic and epigenomic profiling datasets of murine HL-1 cardiomyocytes

Chen A, Huang Y, Li H, et al.

Epigenetic features, such as histone modifications and higher-order genome organization, are fundamental determinants of cell-specific gene expression. However, while the HL-1 cell line is a widely utilized model for cardiac research, a comprehensive and integrated …

Read PDF
Epigenetics Transcriptomics
Full text 2026

Molecular Characterization and Comparative Genomics of Two &lt;i&gt;Staphylococcus pseudintermedius&lt;/i&gt; Strains from Humans in Egypt

Elsakhawy OK, Elaadli H, Badr Y, et al.

<i>Staphylococcus pseudintermedius</i> is an opportunistic bacterium previously associated with dogs but has recently been found in human infections, raising zoonotic concerns. Genomic characterization of human <i>S. pseudintermedius</i> isolates can provide preliminary information on antibiotic resistance, …

Read PDF
Bioinformatics