Search the literature by keyword, topic, or author. Filter to articles with full text available.
10021 results
The emergence of multidrug-resistant bacteria is a major concern from both epidemiological and ecological perspectives. Studying these microorganisms is crucial for developing prevention strategies. We report the complete genome sequence of the multidrug-resistant <i>Citrobacter portucalensis</i> …
Read PDFWe present a telomere-to-telomere genome assembly of <i>Talaromyces purpureogenus</i> strain ISA502, isolated from the maize rhizosphere. The 30.33 Mb genome, assembled using hybrid sequencing, comprises 8 chromosomes with 99% BUSCO completeness, offering improved resolution over …
Read PDFPhytoplasmas are non-culturable obligate intracellular bacteria that cause considerable economic losses in agriculture. Genome sequencing provides crucial insights into their biology and vector dependence. However, genome studies on phytoplasmas are often hampered by their low …
Read PDFDetection of <i>Salmonella</i> in insects is rarely described, especially in insect-based food stuff. Here, we report the genome sequences of two <i>Salmonella</i> isolates belonging to <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar (<i>S</i>.) Stanley and <i>S</i>. Wandsworth …
Read PDF<h4>Background</h4>Telomeres are known to be important for Leishmania biology but the mechanistic of how the process of telomere maintenance contributes to genome stability remains an unanswered question. Their maintenance is most commonly facilitated by the …
Read PDF<i>Limosilactobacillus fermentum</i> NS2301G2, isolated from fermented kimchi, underwent nanopore and Illumina sequencing, revealing a 2,077,637 base pair circular chromosome with 51.51% GC content, providing valuable genetic insights into lactic acid bacteria that contribute to food …
Read PDF<b>Background</b>: Testicular development and spermatogenesis are intricate biological processes controlled by a coordinated transcriptional network. However, comprehensive characterization of full-length transcripts and non-coding RNAs (ncRNAs) during porcine testicular sexual maturation remains limited. <b>Methods</b>: This study …
Read PDFThe soybean cyst nematode (SCN) is one of the most destructive pests affecting soybean production worldwide. Wild soybean (Glycine soja) germplasm offers valuable genetic resources for developing SCN-resistant cultivars. Here, we present a telomere-to-telomere assembly …
Read PDFThe detection of high-consequence viral pathogens is essential for spillover prevention and reduction in transmission but is limited by the low sensitivity of next-generation sequencing technology. Low-titer field samples from a variety of hosts are …
Read PDFDNA methylation plays a key role in gene regulation, genome stability, bacterial adaptation, and many other essential cellular processes. Thanks to nanopore sequencing technology, it is now possible to detect these modifications during sequencing without …
Read PDFHere, we announce the complete genome sequence of <i>Veillonella parvula</i> strain PK1910, obtained from a frozen stock. The genome is composed of one closed contig with a length of 2,213,486 bp, resulting in 98.0× coverage …
Read PDF<h4>Introduction</h4>Temporomandibular joint disorders (TMJD) are common, affecting approximately 30% of the population. While the aetiology of TMJD has been considerably discussed, one aspect that has not been thoroughly investigated is the potential occurrence and role …
Read PDFHepatocellular carcinoma (HCC) is one of the leading causes of cancer-related deaths worldwide. Liver transplantation (LT) remains a vital treatment for HCC, yet it still faces numerous challenges in patient selection, recurrence monitoring, and personalized …
Read PDFMaize (Zea mays) is one of the world's most important crops and a recognized model for biological research, with some individuals having supernumerary B chromosomes. This B chromosome has been studied for decades, yet its …
Read PDF<b>Background/Objectives:</b> The diagnosis of prosthetic joint infection remains difficult. Microbiological cultures frequently have false-positive and false-negative results. This study investigates whether rapid nanopore sequencing can be used to aid the identification of bacteria causing prosthetic …
Read PDF<h4>Background</h4>Advances in our technological capacity to interrogate CNS tumor biology have led to the ever increasing use of genomic sequencing in diagnostic decision making. Presently, CNS tumors are classified based on their epigenetic signatures, leading …
Read PDFRibosomes are key molecular machines that translate mRNA into proteins. Mitoribosomes are specific ribosomes found in mitochondria, which have been shown to be remarkably diverse across eukaryotic lineages. In plants, they possess unique features, including …
Read PDFFreshwater ecosystems are vital for biodiversity and livelihoods in Bangladesh, where interest in fish gut microbiota is growing to aid aquaculture sustainability through microbial interventions. Therefore, this research investigated the bacteriomes of the gut of …
Read PDF<h4>Background</h4>DNA methylation is an epigenetic mechanism involved in gene regulation and cellular differentiation. Accurate and comprehensive assessment of DNA methylation patterns is thus essential for understanding their role in various biological processes and disease mechanisms. …
Read PDFNanopore sequencing enables real-time access to raw signal data, which brings new possibilities for rapid genomic diagnostics. However, current workflows still primarily rely on basecalling, a computationally intensive step that slows subsequent analysis and limits …
Read PDF