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Fermented shrimp paste (Kapi) is a culturally significant condiment valued for its flavor and nutritional value. However, inconsistent production practices may lead to microbial contamination and histamine accumulation, posing health risks. Understanding microbial diversity, salt-tolerant …
Read PDF<i>Peribacillus frigoritolerans</i> is a widely distributed gram-positive bacterium that exhibits several notable characteristics. Here, we report the complete genome sequence of the <i>P. frigoritolerans</i> strain NBTC-101, which was isolated from the rhizosphere soil of melons. …
Read PDFCytomegalovirus (CMV) infections occur in 10%-40% of organ or stem cell transplant patients. Despite the low prevalence, CMV antiviral resistance has an important impact on patient outcomes. Guidelines for transplant recipients recommend that resistance should …
Read PDFDespite the complementary strengths of short- and long-read sequencing approaches, variant-calling methods still rely on a single data type. In this study, we collected and harmonized Nanopore datasets of the seven healthy individuals in the …
Read PDF<h4>Objective</h4>The pathogenic fungus Diplodia sapinea is of significant importance due to its primary role inducing tip dieback on various Pinus species which are widely distributed throughout the world. The objective of this study is to …
Read PDFBACKGROUND: Leishmania relies on posttranscriptional control to regulate gene expression. Protein-coding genes are synthesised as polycistronic precursors that are processed into individual mRNAs by trans-splicing adding the spliced leader (SL) RNA to the 5’-end and …
Read PDFThe complete genome sequence of the <i>Edwardsiella tarda</i> strain MYK24826, isolated from a Japanese patient with prosthetic valve endocarditis, was determined. The genome consisted of a 3,647,674 bp circular chromosome and a 2,866 bp plasmid. …
Read PDFWe report the complete genome sequence of the wine yeast strain <i>Saccharomyces cerevisiae</i> I-118. It was isolated from yeast sediment formed after spontaneous fermentation of Rkatsiteli grapes and is used to produce white wines. Genomic …
Read PDFShort-read RNA sequencing (RNAseq) remains a cornerstone for transcriptome profiling, but is limited in reconstructing full-length transcripts and capturing transcript diversity. While long-read RNAseq spans entire transcripts and resolves complex structures, this technology is hindered …
Read PDFImprovements in sequencing technology make the development of new tools for detection of structural variance more and more common. However, since the tools available for the long-read Oxford Nanopore sequencing are limited, and the selection …
Read PDF<h4>Background</h4>India has made substantial progress in reducing <i>Plasmodium falciparum</i> malaria cases and has set a target to eliminate malaria by 2030. Although artemisinin-based combination therapy (ACT) treatment remains effective, tracking regional differences in genetic variants …
Read PDF<h4>Background and objectives</h4>Facioscapulohumeral muscular dystrophy type 1 (FSHD1) is caused by contraction of the D4Z4 repeat array at 4q35. Genetic diagnosis is particularly difficult in somatic mosaic cases, where conventional short-read sequencing cannot directly resolve …
Read PDFHere, we report the complete genome sequences of four strains of <i>Pseudomonas allii</i> (MAFF 301514, MAFF 302050, MAFF 730042, and MAFF 730146) that represent pathogens causing bacterial rot in onion, lettuce, Chinese yam, and tomato, …
Read PDFCRISPR-Cas systems provide adaptive immunity by integrating short DNA fragments from mobile genetic elements into host arrays. While the core biochemical mechanism of adaptation is well defined, its modulation by physiological contexts is less well …
Read PDFDiverse Proteobacteria and Actinobacteria affiliate with plants, including strains associated with plant growth and resilience. Here, we share annotated genome sequences for three root-associated bacteria isolated from <i>Sorghum bicolor</i> L. Moench in Arizona: <i>Sphingomonas</i> sp. …
Read PDFWine yeast <i>Saccharomyces cerevisiae</i> strain I-25, isolated from yeast sediment formed after spontaneous fermentation of Cabernet Sauvignon grapes in the Krasnodar region, is used to produce regional red wines in Russia. To characterize its genetic …
Read PDFHuman T-lymphotropic virus type 1 (HTLV-1), the first human retrovirus identified, is linked to adult T-cell leukemia and HTLV-1-associated myelopathy/tropical spastic paraparesis. However, its post-transcriptional regulation remains poorly understood. Here, we used Oxford Nanopore direct …
Read PDFThe genus <i>Priestia</i>, formerly referred to as <i>Bacillus</i>, is capable of growing under abiotic stresses in the ecosystem. We now report the complete genome sequence of <i>Priestia aryabhattai</i> KC-6A, which was obtained from culture soil …
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