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10297 results

Full text 2026

A blueprint for local and distal invasion programs in glioblastoma

Chanoch-Myers R, Hara T, Greenwald AC, et al.

Glioblastoma invasion into brain parenchyma presents significant challenges for treatment but remains poorly understood. In this study, we combine single-cell RNA sequencing, spatial transcriptomics, and multiplexed imaging of orthotopic xenograft models to investigate glioblastoma invasion. …

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Transcriptomics
Full text 2026

Multi-omics interrogation identifies IRF4 as a causal transcription factor in monocytes that suppresses colorectal cancer progression by remodeling the immune microenvironment and inhibiting EMT

Wen H, Li F, He Q, et al.

<h4>Background</h4>Although surgery and chemotherapy remain standard treatments for colorectal cancer (CRC), immunotherapy offers a promising avenue for patients with advanced disease. However, the cellular and molecular mechanisms underlying CRC progression and immune evasion are not …

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Transcriptomics
Full text 2026

Transcriptomic Meta-Analysis as a Framework for Robust Cross-Study Biological Inference

Olivas-Bernal CA, Vargas-Albores F, Garibay-Valdez E, et al.

The increasing availability of transcriptomic data has created new opportunities for integrating gene expression studies across biological systems and conditions. However, differences in experimental design, sequencing platforms, and sample composition introduce substantial heterogeneity, limiting direct …

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Transcriptomics
Full text 2026

Computational Approaches to Cancer Cell Dormancy: From Detection to Dynamic Modelling

Spink LGN, Pan S, Kim M, et al.

Cancer cell dormancy is a clinically consequential yet computationally under-defined phenomenon characterised by reversible growth arrest and delayed disease recurrence. Although advances in single-cell and multi-omic profiling have improved detection of dormant and persister populations, …

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Single-Cell Transcriptomics
Full text 2026

Multi-omics analysis reveals that CAPG positive macrophages are key immunosuppressive drivers and prognostic determinants in the ferroptosis landscape of hepatocellular carcinoma

Yin X, Li Y, Zheng S, et al.

Hepatocellular carcinoma (HCC) is characterized by substantial heterogeneity and immune tolerance, and its therapeutic efficacy is profoundly influenced by the immune microenvironment. Ferroptosis, an iron-dependent form of regulated cell death, is closely linked to tumor …

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Single-Cell Transcriptomics
Full text 2026

Molecular mechanisms and network interactions in radiation-induced lung injury

Liu J, Ma X, Wang H, et al.

Radiation-induced lung injury (RILI) represents a major dose-limiting complication of thoracic radiotherapy, profoundly affecting therapeutic outcomes and patient quality of life. Although RILI is clinically significant, its molecular underpinnings are not fully elucidated, hampering the …

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Single-Cell
Full text 2026

Multi-Omics Integration Reveals the Genetic Mechanisms of Periodontitis and Predicts Therapeutic Drugs

Cao R, Xu S, Xiang J, et al.

<h4>Background</h4>Periodontitis is a chronic inflammatory disease driven by host immune dysregulation. However, the specific genetic regulatory mechanisms underlying this disease remain unclear. Identifying key molecular targets is crucial for precise therapeutic intervention.<h4>Methods</h4>This study integrated genome-wide …

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Transcriptomics
Full text 2026

Multi-Omics reveals SPP1 + malignant and CXCR4&lt;sup&gt;+&lt;/sup&gt; TAM crosstalk predicts immunotherapy response in lung adenocarcinoma

Wang BL, Lian JW, Xu JL, et al.

<h4>Background</h4>Lung adenocarcinoma (LUAD), a common lung cancer subtype, is significantly influenced by the immune microenvironment. Immune checkpoint inhibitors have shown limited efficacy in Lung adenocarcinoma due to the immunosuppressive tumor microenvironment (TME). Identifying predictive biomarkers …

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Transcriptomics
Full text 2026

Atherosclerotic Fibrous Plaques in Women Present ECM Remodeling Linked to TGF-β

Sakkers TR, Mili E, Winter H, et al.

<h4>Background</h4>Sex and atherosclerotic plaque histology are intertwined, with fibrous plaques being more prevalent in women. Plaque erosion, a significant contributor to acute coronary syndromes, is linked to fibrous plaques and is more prevalent in women …

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Epigenetics Single-Cell Transcriptomics
Full text 2025

Untangling the fusion of spatial omics and mechanobiology

Dembowitz S, Moctezuma FGR, Zhang N, et al.

Cellular biophysical properties are increasingly linked to disease development, including muscular dystrophy, cancer, glaucoma, and other conditions. Transcription profiles of various types have been utilized to elucidate the relationship between genes and their regulatory functions. …

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Transcriptomics