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1073 results

Full text 2026

Integrated multi-omics deciphers sepsis immune dysregulation: a dual-pathway targeted small-molecule therapy improves survival and ameliorates multi-organ dysfunction

Duan J, Jiang L, Hu K, et al.

<h4>Introduction</h4>Sepsis is a life-threatening organ dysfunction syndrome with persistently high global mortality, driven by dysregulated host immune response. Existing single-target therapies fail to simultaneously address hyperinflammation and impaired tissue repair, leading to limited clinical efficacy …

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Single-Cell Transcriptomics
Full text 2025

Integrative multi-omics analysis of IFNγ-induced macrophages and atherosclerotic plaques reveals macrophage-dependent STAT1-driven transcription in atherosclerosis

Eskandarian Boroujeni M, Lopacinska N, Antonczyk A, et al.

Atherosclerosis is a chronic inflammatory disease of blood vessels, characterized by atherosclerotic lesions in large- and medium-sized arteries. IFNγ is a crucial mediator of atherosclerosis through activation of signal transducer and activator of transcription (STAT)1. …

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Epigenetics Single-Cell
Full text 2026

USADAE: a deep learning approach to disentangle hidden covariates in RNA-seq data

Chen X, Guo L, Chen Y, et al.

Integrative analysis of RNA-seq datasets faces critical challenges in disentangling biologically meaningful signals from implicit confounders, such as unmeasured technical variability and nonlinear interactions between biological and technical variables. Traditional methods like Surrogate Variable Analysis …

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Single-Cell Transcriptomics
Full text 2026

Decoding neuroimmune ferroptotic vulnerability in isoflurane-induced neonatal neurotoxicity via the SLC7A11/GPX4 axis

Huang P, Chen C, Wang M, et al.

<h4>Introduction</h4>Early-life exposure to general anesthetics has been associated with increased neurodevelopmental vulnerability, but the cell type-resolved mechanisms remain incompletely understood. Here, we investigated whether isoflurane-induced neonatal neurotoxicity is associated with a glia-linked ferroptotic susceptibility state …

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Single-Cell Transcriptomics
Full text 2025

Identification and expression analysis of papain-like cysteine proteases gene family and response to B. cinerea stress in F. vesca

Bai Y, Wang H, Wu M, et al.

<h4>Background</h4>Papain-like cysteine protease (PLCP), a vital subgroup of peptidases, play crucial roles in various biological processes including plant growth, seed germination, anther development, and stress responses.<h4>Results</h4>In this study, 44 FvPLCP genes were identified through phylogenetic …

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Single-Cell Transcriptomics
Full text 2026

A Conserved Fibroblast-Myeloid Gene Signature in Digestive Cancers: Multi-Omics Integration Identifies &lt;i&gt;DCN&lt;/i&gt;, &lt;i&gt;COL10A1&lt;/i&gt;, &lt;i&gt;CTHRC1&lt;/i&gt;, and &lt;i&gt;TREM2&lt;/i&gt; as Candidate Microenvironmental Markers

Li C, Yang Y, Zhang W, et al.

Digestive cancers exhibit high heterogeneity and poor prognosis, yet whether their tumor microenvironments share conserved stromal-immune interactions remains unclear. Here, we performed an integrative multi-omics analysis across seven digestive cancer types and identified a conserved …

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Single-Cell Transcriptomics
Full text 2026

Endothelial AGO1 deficiency reduces breast cancer burden in mice

Liu X, Tapia A, Yuan D, et al.

Endothelial cells (ECs) are crucial in cancer development and progression, partly by regulating tumor angiogenesis and immune modulation. As a key component of the RNA-induced silencing complex, Argonaute 1 (AGO1) regulates tumor biology, yet the …

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Single-Cell Transcriptomics