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1073 results

Full text 2025

IceQream: Quantitative chromosome accessibility analysis using physical TF models

Bercovich A, Lifshitz A, Eldar M, et al.

Single-cell mapping of chromosomal accessibility patterns has recently led to improved predictive modelling of epigenomic activity from sequence. However, quantitative models explaining the epigenome using directly interpretable components are still lacking. Here we develop IceQream …

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Bioinformatics Epigenetics Single-Cell
Full text 2025

Emerging technologies of single-cell multi-omics

Kim YJ, Takahashi K.

The heterogeneity of the hematopoietic system was largely veiled by traditional bulk sequencing methods, which measure the averaged signals from mixed cellular populations. In contrast, single-cell sequencing has enabled the direct measurement of individual signals …

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Single-Cell
Full text 2026

Macrophages expressing macrophage receptor with collagen structure attenuate liver fibrosis through a tissue restoration phenotype

Jerez S, Cooper SA, Yaqoob U, et al.

Liver macrophages are central in maintaining hepatic homeostasis and mediating immune responses during liver injury, including fibrosis. Macrophages may have proinflammatory or antiinflammatory properties, but which properties influence fibrosis remains unclear. To explore the role …

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Single-Cell Transcriptomics
Full text 2024

Decoding Kidney Pathophysiology: Omics-Driven Approaches in Precision Medicine

Delrue C, Speeckaert MM.

Chronic kidney disease (CKD) is a major worldwide health concern because of its progressive nature and complex biology. Traditional diagnostic and therapeutic approaches usually fail to account for disease heterogeneity, resulting in low efficacy. Precision …

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Epigenetics Single-Cell Transcriptomics
Full text 2025

The Emerging Role of Omics-Based Approaches in Plant Virology

Samarskaya V, Spechenkova N, Kalinina NO, et al.

Virus infections in plants are a major threat to crop production and sustainable agriculture, which results in significant yield losses globally. The past decade has seen the development and deployment of sophisticated high-throughput omics technologies …

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Single-Cell Transcriptomics
Full text 2026

Therapeutic targeting of cancer stem cell-specific surface glycans and glycoproteins

Al-Khreisat MJ, Abdulsahib WK, Abdulsahib WK, et al.

Cancer stem cells (CSCs) represent a critical subpopulation within tumors, driving malignancy, metastasis, and therapeutic resistance. Their unique biological attributes, particularly the distinctive landscape of surface glycans and glycoproteins, offer promising avenues for targeted therapeutic …

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Epigenetics Single-Cell
Full text 2025

Statistical Methods for Multi-Omics Analysis in Neurodevelopmental Disorders: From High Dimensionality to Mechanistic Insight

Airoldi M, Remori V, Fasano M.

Neurodevelopmental disorders (NDDs), including autism spectrum disorder, intellectual disability, and attention-deficit/hyperactivity disorder, are genetically and phenotypically heterogeneous conditions affecting millions worldwide. High-throughput omics technologies-transcriptomics, proteomics, metabolomics, and epigenomics-offer a unique opportunity to link genetic variation …

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Epigenetics Single-Cell Transcriptomics
Full text 2026

When Small Meets Smaller: Immune Modulation and Virulence Strategies in Insect-Bacteria Interactions

Bianchi T, Mastore M, Banfi D, et al.

Insects represent powerful experimental systems for investigating host-microorganism interactions, providing valuable insights into bacterial pathogenicity, immune regulation, symbiosis, and antimicrobial discovery. This review examines the complex relationships between insects and bacteria, focusing on the mechanisms …

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Epigenetics Single-Cell Transcriptomics
Full text 2026

Single-Cell Atlas of Subchondral Bone Marrow Lesions Reveals Proteostasis Dysfunction as a Druggable Mechanism for Early Osteoarthritis

Xu H, He T, Qian Y, et al.

Subchondral bone marrow lesions (BMLs) constitute a pathognomonic imaging feature of both incipient and progressive osteoarthritis (OA). However, the pathological features and molecular mechanisms underlying BMLs remain poorly characterized. Here, we innovatively established and dynamically …

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Single-Cell Transcriptomics