Browse Papers

Search the literature by keyword, topic, or author. Filter to articles with full text available.

784 results

Full text 2025

Microbiome as a predictive biomarker in locally advanced rectal cancer

Mulet Margalef N, Martín Abad B, Martínez-Balibrea E, et al.

The incidence of locally advanced rectal cancer (LARC) among young people is rising alarmingly. In recent years, new protocols have been introduced for the management of LARC, some of which are associated with the risk …

Read PDF
Epigenetics Metagenomics
Full text 2026

Environmentally Driven Precision Neurology: A Neurogenomic Perspective

Ang MY, Feisal NAS, Ramli MDC, et al.

<b>The</b> World Health Organization identifies environmental pollution as a primary global health threat, and its role in the onset and progression of neurological diseases is becoming increasingly clear. In the era of precision medicine, understanding …

Read PDF
Bioinformatics Epigenetics
Full text 2026

Accurate chromatin marks peak calling with Omnipeak

Shpynov O, Artyomov MN.

Chromatin immunoprecipitation sequencing (ChIP-seq) is a widely used technique for identifying transcription-factor binding and histone modifications across the genome. Peaks in ChIP-seq data vary in length depending on the biological context, from narrow transcription factor …

Read PDF
Bioinformatics Epigenetics
Full text 2026

Blood-based DNA methylation captures variance in adult height

Hatton AA, Hillary RF, McCartney DL, et al.

<h4>Background</h4>While height is a highly heritable trait with strong polygenic prediction, previous studies have postulated that minimal variation of its individual differences can be captured by DNA methylation (DNAm). We investigated the role of blood-based …

Read PDF
Epigenetics
Full text 2026

Decoding plant physiology through systems biology: Integrative multi-omics and computational perspectives for next-generation crop design

Kundu BK, Tanti B.

The convergence of high-resolution multi-omics technologies with computational systems biology is transforming plant physiology by enabling predictive, mechanistic, and field-relevant insights into crop performance, adaptation, and resilience. This review presents an integrative and forward-looking synthesis …

Read PDF
Epigenetics Single-Cell Transcriptomics
Full text 2026

Predicting progression of Alzheimer's disease using blood-based multi-omics data

Vashishath Y, Pijani BA, Goud Baddam N, et al.

<h4>Motivation</h4>Early prediction of Alzheimer's disease (AD) progression from mild cognitive impairment (MCI) remains a major challenge, particularly when relying on non-invasive biomarkers. Identifying individuals with progressive MCI (pMCI) before conversion to AD could improve intervention …

Read PDF
Epigenetics
Full text 2026

Epigenetic regulation of gene expression in rare inherited retinal disorders

Menna F, De Luca L, Meduri A, et al.

The retina is a highly specialized neural tissue characterized by extreme cellular differentiation, high metabolic demand, and lifelong exposure to environmental stressors. These features render retinal cell identity exquisitely dependent on epigenetic regulation of gene …

Read PDF
Epigenetics
Full text 2024

EpiCHAOS: a metric to quantify epigenomic heterogeneity in single-cell data

Kelly K, Scherer M, Braun MM, et al.

Epigenetic heterogeneity is a fundamental property of biological systems and is recognized as a potential driver of tumor plasticity and therapy resistance. Single-cell epigenomics technologies have been widely employed to study epigenetic variation between-but not …

Read PDF
Epigenetics