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1201 results

Full text 2026

OSMAC guided bioprospecting of Atlantic sponges reveals novel bacterial species and evidence for the antimicrobial thiazole alkaloid agrochelin II

Williams SE, Stennett HL, Devine AJ, et al.

The deep sea remains a major reservoir of underexplored microbial diversity and biosynthetic novelty. Here, we describe three bacterial species isolated from Atlantic sponges, including <i>Stappia quadratibracata</i> sp. nov., <i>Bacillus crepusculi</i> sp. nov., and <i>Psychrobacter …

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Metagenomics
Full text 2025

Genomic insights into Gordonia diversity: proposal of three novel species (Gordonia. altitudinis sp. nov., Gordonia. ligustrum sp. nov., and Gordonia. pistacia sp. nov.) with distinct environmental and biomedical traits

Li CJ, Zhang J, Su J, et al.

<h4>Background</h4>Rare actinomycetes, particularly Gordoni spp., are emerging as critical sources of bioactive metabolites and opportunistic pathogens.<h4>Results</h4>In this study, we isolated three novel Gordonia strains from soil samples and characterized their taxonomic status using a polyphasic …

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Metagenomics
Full text 2025

Genomic insights into novel predatory myxobacteria isolated from human feces

Das J, Pal S, Negi A, et al.

Myxobacteria are Gram-negative, spore-forming predatory bacteria isolated from diverse environmental samples that feed on other microbes for their survival and growth. However, no reports of cultured representatives from the human gut have been published to …

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Bioinformatics Metagenomics
Full text 2026

Evolutionary Strategies for Heavy Metal Resistance: Genomic Plasticity in &lt;i&gt;Pseudomonas&lt;/i&gt; Versus Stability in &lt;i&gt;Aeromonas&lt;/i&gt; and &lt;i&gt;Bacillus&lt;/i&gt;

Peng D, Huang T, Kang W.

Heavy metal resistance represents a critical microbial trait shaped by lineage-specific evolutionary pressures, yet its genomic foundations and diversification across major bacterial taxa remain poorly resolved. This study presented a comparative pangenomic analysis of <i>Aeromonas</i> …

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Metagenomics
Full text 2024

&lt;i&gt;Geodermatophilus maliterrae&lt;/i&gt; sp. nov., a member of the &lt;i&gt;Geodermatophilaceae&lt;/i&gt; isolated from badland surfaces in the Red Desert, Wyoming, USA

Ben Tekaya S, Nouioui I, Flores GM, et al.

A novel Gram-stain-positive, black-pigmented bacterium, designated as WL48A <sup>T</sup>, was isolated from the surface of badland sedimentary rock in the Red Desert of Wyoming and characterized using a polyphasic taxonomic approach. Good growth occurred at …

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Bioinformatics Metagenomics
Full text 2026

Multiomics characterization of acute child illness and mortality in Africa and South Asia

Espinosa CA, Njunge JM, Tickell KD, et al.

Childhood illnesses from infectious diseases in low- and middle-income countries contribute substantially to the global under-five mortality. Many hospitalized children experience incomplete recovery, readmission, and post-discharge mortality despite guideline-directed care. However, targeted interventions remain elusive …

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Metagenomics
Full text 2026

Prediction of genetic relatedness of &lt;i&gt;Escherichia coli&lt;/i&gt; using neighbor typing: a tool for rapid outbreak detection

Carroll AC, Mortimer L, Ghosh H, et al.

Identifying the genetic relatedness of resistant bacterial pathogens in healthcare settings can help identify undetected transmission events and outbreaks. However, current methods are time- and resource-intensive. We evaluated a rapid neighbor typing method paired with …

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Metagenomics Nanopore Sequencing
Full text 2026

Long-read metagenomics reveals phage dynamics in the human gut microbiome

Wirbel J, Hickey AS, Chang D, et al.

Gut bacteriophages profoundly impact microbial ecology and health<sup>1-3</sup>; yet, they are understudied. Using deep long-read bulk metagenomic sequencing, we tracked prophage integration dynamics in stool samples from six healthy individuals, spanning a 2-year timescale. Although …

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Metagenomics
Full text 2026

Transposable elements are driving rapid adaptation of Enterococcus faecium

Grieshop MP, Behr AA, Bowden S, et al.

Bacterial pathogens adapt rapidly to clinical and within-host selective pressures<sup>1</sup>. Insertion sequences (IS) are transposable elements that can contribute to pathogenic adaptation<sup>2</sup>, but their activity and consequences in contemporary clinical populations are not well characterized. …

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Metagenomics