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1201 results

Full text 2025

Comparative analysis of statistical and deep learning-based multi-omics integration for breast cancer subtype classification

Omran MM, Emam M, Gamaleldin M, et al.

<h4>Background</h4>Breast cancer (BC) is a critical cause of cancer-related death globally. The heterogeneity of BC subtypes poses challenges in understanding molecular mechanisms, early diagnosis, and disease management. Recent studies suggest that integrating multi-omics layers can …

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Epigenetics Metagenomics Transcriptomics
Full text 2025

Microbiome as a predictive biomarker in locally advanced rectal cancer

Mulet Margalef N, Martín Abad B, Martínez-Balibrea E, et al.

The incidence of locally advanced rectal cancer (LARC) among young people is rising alarmingly. In recent years, new protocols have been introduced for the management of LARC, some of which are associated with the risk …

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Epigenetics Metagenomics
Full text 2026

New Personalized Medicine Model for Medication Management

Alagiakrishnan K, Halverson T, Olivares DVF, et al.

When using traditional approaches, such as pharmacokinetics and pharmacodynamics, the entire cellular or molecular response to drugs in the body cannot be fully ascertained or established. The oral medication process involves pharmacokinetics, followed by oral …

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Bioinformatics Metagenomics Transcriptomics
Full text 2026

Advancing precision immuno-oncology in melanoma: the synergistic convergence of personalized neoantigen vaccines and multi-omics biomarker profiling

Hou Y, Chen C, Chen X.

Cutaneous melanoma represents a paradigm of immunological complexity, where multifactorial primary and acquired resistance often undermine the clinical efficacy of conventional immune checkpoint blockades and targeted therapies. This review provides a comprehensive analysis of the …

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Epigenetics Metagenomics Transcriptomics
Full text 2026

Nutritional Regulation of Ovarian Bioenergetics: Implications for Reproductive Aging and Female Infertility

Kim J, Lee J.

Ovarian function is critically dependent on tightly coordinated cellular energy metabolism, which governs follicular development, oocyte competence, and reproductive longevity. Increasing evidence indicates that metabolic dysregulation, including mitochondrial dysfunction, oxidative imbalance, and impaired NAD<sup>+</sup> metabolism, …

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Epigenetics Metagenomics
Full text 2026

Beyond Koch's postulates: the pathobiome paradigm in grapevine esca disease

Gramaje D, Eichmeier A.

Esca is one of the most damaging fungal diseases of grapevine and continues to defy Koch's postulates. Although Phaeomoniella chlamydospora, Phaeoacremonium minimum, and Fomitiporia mediterranea are consistently associated with wood necrosis in esca-symptomatic vines, they …

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Metagenomics
Full text 2025

Rheumatoid Arthritis: Biomarkers and the Latest Breakthroughs

Xue M, Wang H, Campos F, et al.

Rheumatoid arthritis (RA) is a heterogeneous autoimmune disease characterized by variable clinical manifestations and a complex, often unpredictable disease trajectory, which hinders early diagnosis and personalized treatment. This review highlights recent breakthroughs in biomarker discovery, …

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Bioinformatics Metagenomics Transcriptomics
Full text 2026

Translational Assessment of Omics Approaches in Endometriosis: Bridging Molecular Discovery with Clinical Utility

Salido-Guadarrama I, Cruz-Orozco O, Camacho-Arroyo I, et al.

Endometriosis affects an estimated 5-10% of women of reproductive age and presents with substantial clinical and biological heterogeneity. Recent clinical guidelines have shifted toward symptom-guided diagnosis supported by expert imaging, moving away from mandatory diagnostic …

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Epigenetics Metagenomics Transcriptomics
Full text 2025

Integration of multi-omics approaches in exploring intra-tumoral heterogeneity

Dong M, Wang L, Hu N, et al.

Intra-tumoral heterogeneity (ITH) is common in malignant tumors and arises from dynamic variations across genetic, epigenetic, transcriptomic, proteomic, metabolic, and microenvironmental factors. This complexity drives tumor evolution and treatment resistance, undermining the accuracy of clinical …

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Epigenetics Metagenomics Single-Cell
Full text 2026

Profiling Soil-Plant-Microbial Communities: DNA and Multi-Omics Techniques

Li S, Chiodi C, Maucieri C, et al.

Interactions among plant roots, soil, and microorganisms in the rhizosphere regulate nutrient cycling, plant health, and ecosystem resilience. Recent advances in DNA sequencing and multi-omics are contributing to a shift from primarily descriptive surveys toward …

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Metagenomics
Full text 2026

Artificial Intelligence-Enabled Multi-Omics for Predicting Immune Checkpoint Inhibitor Response and Resistance

Wang X, He J, Ding G, et al.

Immune checkpoint inhibitors (ICIs) have reshaped oncology, yet overall response rates remain modest and resistance is common, driven by tumor heterogeneity and evolving tumor-immune crosstalk. Established biomarkers (PD-L1, tumor mutational burden, microsatellite instability) provide incomplete …

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Epigenetics Metagenomics Single-Cell
Full text 2025

Assessing the impact of bariatric surgery on cardiovascular risk in type 2 diabetes: a systematic review and meta-analysis using OMICs data

Almazrouei B, Mousa M, Al Dain Marzouka N, et al.

Type 2 diabetes (T2D) is a complex, multifactorial metabolic disorder, and while bariatric surgery has emerged as a promising intervention for obesity-related T2D with significant metabolic benefits, its long-term durability and potential for remission vary …

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Epigenetics Metagenomics Transcriptomics
Full text 2026

Multi-omics biomarkers for predicting resistance, hyperprogression, and immune-related toxicity during PD-1/PD-L1 therapy in lung cancer: a literature review

Hu N, Wang Z, Liu M, et al.

Immune checkpoint inhibitors targeting programmed cell death protein 1 (PD-1) and its ligand programmed death-ligand 1 (PD-L1) have transformed the management of advanced lung cancer, yet most patients experience primary resistance, hyperprogressive disease (HPD), or …

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Epigenetics Metagenomics Transcriptomics
Full text 2026

Estimating time since influenza virus exposure using single-cell proteomic data

Rizzo Nervo K, Hajiakhoond Bidoki N, Chen H, et al.

<h4>Introduction</h4>Determining when the onset of a respiratory infection occurred is important for effective clinical management and can aid in mapping transmission events. However, current diagnostic assays report only pathogen detection status and do not provide …

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Metagenomics Single-Cell
Full text 2026

Microbial single-cell omics in situ

Lan X, Liang Q, He J, et al.

Metagenomics has enabled the understanding of the microbial composition and functional potential in various environments. Using laser-induced forward transfer (LIFT) technology, we report high-quality microbial single-cell genomes or transcriptomes in complex samples such as mouse …

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Metagenomics