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2701 results

Full text 2026

Spatial transcriptomics of developing human lungs defines cellular phenotypes associated with age, lineage and location

Ren Y, Danopoulos S, Deutsch GH, et al.

Despite significant advances in understanding lung development, the intricate cellular interactions and spatial organization of the developing human lung remain incompletely defined. Spatial transcriptomics enables gene expression profiling within the native tissue context, providing unprecedented …

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Epigenetics Single-Cell Transcriptomics
Full text 2026

Lung microbiota analysis in early-stage lung adenocarcinoma

Sun K, Li B, Zhang C, et al.

Lung adenocarcinoma (LUAD) is a predominant subtype of lung cancer and is highly lethal. The lung tissue microbiota has been implicated in lung cancer biology but remains incompletely defined at early stages. We enrolled 40 …

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Metagenomics Transcriptomics
Full text 2025

Identification of insect-specific viruses in mosquitoes collected from wildlife and rural areas in north-eastern parts of South Africa using a metagenomic RNA sequencing approach

Kacnik S, MacIntyre C, Guarido M, et al.

BACKGROUND: Next generation sequencing (NGS) has expanded virus detection capabilities beyond the limitations of sequence-specific methods. While mosquito collections in South Africa (SA) have been investigated for the major arbovirus genera (Alpha-, Orthobunya-, and Orthoflavivirus), …

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Metagenomics Transcriptomics
Full text 2025

Genome-Resolved Metatranscriptomics Provide Insights on Immigration Influence in Structuring Microbial Community Assembly of a Full-Scale Aerobic Granular Sludge Plant

Mohamed AYA, Gill L, Monleon A, et al.

Understanding the relative influence of immigration and species sorting in wastewater treatment systems is essential, as bacteria in influent wastewater can significantly impact treatment system functionality. This study investigated the contribution of immigration to the …

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Metagenomics Transcriptomics
Full text 2026

Contrasting leaf transcriptomic responses to drought and heat stress in the desert CAM species <i>Mesembryanthemum forsskalii</i>

Dhawi F, Alsanie SI.

<h4>Introduction</h4>Dryland ecosystems are increasingly exposed to extreme heat and prolonged water limitation. Facultative crassulacean acid metabolism (CAM) enables certain desert plants to enhance water-use efficiency and adjust carbon assimilation under stress conditions. <i>Mesembryanthemum forsskalii</i> Hochst. …

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Metagenomics Transcriptomics
Full text 2026

Giant chromosomes of a tiny plant-the complete telomere-to-telomere genome assembly of the simple thalloid liverwort Apopellia endiviifolia (Jungermanniopsida, Marchantiophyta)

Szablińska-Piernik J, Sulima P, Sawicki J.

<h4>Background</h4>The liverwort Apopellia endiviifolia, a dioicous, simple thalloid species, is notable for its cryptic diversity, habitat adaptability, and genomic innovation, and it represents a clade that is sister to all other Jungermanniopsida. These features make …

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Genome Assembly Transcriptomics
Full text 2026

Identification of Novel Alternative Transcripts of the Human ALKBH Gene Family and Investigation of Their Unique Expression Signatures in Cancer Cells

Athanasopoulou K, Michalopoulou VI, Tsiakanikas P, et al.

The human <i>ALKBH</i> gene family comprises nine Fe<sup>2+</sup>/α-ketoglutarate-dependent dioxygenases that catalyze the oxidative demethylation of DNA, RNA, and proteins, thereby influencing key cellular processes. Consequently, dysregulation of these enzymes has been implicated in various human …

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Transcriptomics
Full text 2025

Integrated Transcriptomic and Metabolomic Analyses Shed Light on the Regulation of Aromatic Amino Acid Biosynthesis in a Novel Albino Tea (&lt;i&gt;Camellia sinensis&lt;/i&gt;) Mutation

Gao Y, Li S, Zhang X, et al.

Off-white or yellowish shoots are common in tea plants (<i>Camellia sinensis</i> L.), and such albino variations are often accompanied by metabolic reprogramming, including increased contents of amino acids and lower levels of polyphenols. Nonetheless, the …

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Nanopore Sequencing Transcriptomics