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2701 results

Full text 2026

Prospective multicentre study of upper respiratory mucosal transcriptomics reveals two major endotypes of critically ill COVID-19 patients

Bay P, Boizeau L, Préau S, et al.

<h4>Background</h4>Severe COVID-19 is associated with dysregulated immune responses. Immune responses heterogeneity was previously reported during the first waves of the pandemic. We aimed to characterise mucosal transcriptomic profiles in critically-ill patients during the Omicron era.<h4>Methods</h4>This …

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Bioinformatics Transcriptomics
Full text 2025

Single-cell and spatial transcriptomics reveal lactylation-associated tumor cell clusters and define a prognostic risk model in glioblastoma

Han R, Chi G, Sun D, et al.

<h4>Background</h4>Glioblastoma (GBM) is the most aggressive adult brain tumor, marked by intratumoral heterogeneity and therapy resistance. Metabolic reprogramming through histone lactylation has been linked to tumor progression and immune suppression. However, the spatial and single-cell …

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Transcriptomics
Full text 2026

The Effects and Mechanisms of Pomegranate on Regulating Lipid Metabolism

Wang H, Liu J, Dong X, et al.

Hyperlipidemia is a major risk factor for cardiovascular disease, yet effective dietary interventions remain underexplored. Pomegranate (POG) has been recognized for its potential lipid-lowering effects, but its underlying mechanisms require further investigation. To elucidate the …

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Transcriptomics
Full text 2026

Single-cell multiomic atlas of healthy pediatric bone marrow reveals age-dependent differences in lineage differentiation driven by stromal signaling

Hanemaaijer ES, Müskens KF, Kal IJ, et al.

Childhood is a critical period for hematopoietic development and susceptibility to hematologic disease. Here we generated a multimodal single-cell atlas of healthy human bone marrow, capturing mRNA and surface protein expression in 90,710 cells, including …

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Single-Cell Transcriptomics
Full text 2025

Exploration of the roles of CAFs in melanoma based on single-cell transcriptomics and spatial transcriptomics

Hong S, Zhao Y, Hu A, et al.

<h4>Background</h4>Cancer-associated fibroblasts (CAFs) are increasingly recognized as critical contributors to the limited efficacy of immunotherapy, particularly through the establishment of immune-excluded tumor microenvironments. However, the functional heterogeneity and spatial ecological roles of CAFs in melanoma …

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Transcriptomics
Full text 2026

LnCeVar 2.0: an updated resource and web tools for genomic variations disrupting ceRNA networks from single-cell/spatial transcriptomics data

Guo Q, Liu Q, Xin M, et al.

LnCeVar 2.0 (available at http://bio-bigdata.hrbmu.edu.cn/LnCeVar or http://www.bio-bigdata.net/LnCeVar) is an updated database investigating genomic variations that disrupt competing endogenous RNA (ceRNA) networks via single-cell and spatial transcriptomics. Enhancements include expanded data and improved features: (i) 16 …

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Transcriptomics
Full text 2025

Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency

Kgabeng T, Wang L, Ngwangwa HM, et al.

Advances in cardiac regenerative medicine increasingly rely on integrating artificial intelligence with spatial multi-omics technologies to decipher intricate cellular dynamics in cardiomyocyte differentiation. This systematic review, synthetising insights from 88 PRISMA selected studies spanning 2015-2025, …

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Epigenetics Single-Cell Transcriptomics