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Full text 2026

Draft genome sequence of <i>Salmonella enterica</i> subsp. enterica serovar Typhimurium SBI_BS16_ABA_BD isolated from broiler chicken in Dhaka, Bangladesh

Anne AB, Hossen T, Sahib MS, et al.

Herein, we report the genome of <i>Salmonella enterica</i> strain SBI_BS16_ABA_BD, isolated from broiler chicken in Bashundhara, Dhaka, Bangladesh. The 4,990,699-bp genome (51.01% G + C) comprises 57 contigs with 217× coverage with 4,705 coding sequences, …

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Bioinformatics
Full text 2025

White paper: standards for handling and analyzing plant pan-genomes

Heuermann MC, Barros P, Beier S, et al.

Plant pan-genomes, which aggregate genomic sequences and annotations from multiple individuals of a species, have emerged as transformative tools for understanding genetic diversity, adaptation, and evolutionary dynamics. Super-pan-genomes, extending across species boundaries, further enable comparative …

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Bioinformatics
Full text 2025

The genome sequence of the Ibiza wall lizard, &lt;i&gt;Podarcis pityusensis&lt;/i&gt; (Boscá, 1883)

Feiner N, Uller T, de la Cruz F, et al.

Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacertinae; <i>Podarcis</i>; <i>Podarcis pityusensis</i> (Boscá, 1883) (NCBI:txid74359).

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Bioinformatics
Full text 2025

ntRoot: computational inference of human ancestry at scale from genomic data

Warren RL, Coombe L, Wong J, et al.

<h4>Motivation</h4>Ancestry information is essential to large cohort studies but is often unavailable or inconsistently measured. For studies involving genome sequencing, existing ancestry prediction methods are constrained by computational demands and complex input requirements. Efficient, scalable …

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Bioinformatics
Full text 2025

The impact of telomere-to-telomere genome assembly in the plant pan-genomics era

Aoyagi Blue Y, Iimura H, Sato MP, et al.

Advances in sequencing technologies have enabled the determination of genome sequences of multiple lines within a single species. Comparative analysis of multiple genome sequences reveals all genes present within a species, providing insight into the …

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Bioinformatics Genome Assembly Nanopore Sequencing