Browse Papers

Search the literature by keyword, topic, or author. Filter to articles with full text available.

3689 results

Full text 2026

Phylogenomic profile of exon-intron organization across angiosperms, their relationships with protein domains, and functional implications

Zhang T, Zhang L, Ma H, et al.

Eukaryotic genes usually encode proteins and contain exons in different size, including micro and small exon categories. However, genome-wide gene exon-intron organizations and their conservation across angiosperms have not been investigated. Among exons of protein-coding …

Read PDF
Bioinformatics Transcriptomics
Full text 2026

Antimicrobial Activity of Actinobacteria Isolated From Kratom (<i>Mitragyna speciosa</i>) Leaves: Secondary Metabolite Profiling and Genome Analysis of <i>Micromonospora chersina</i> NRAIS18

Pitiwittayakul N, Niyomvong N, Tedsree N, et al.

Actinobacteria associated with medicinal plants are recognized as prolific sources of novel bioactive compounds. Kratom (<i>Mitragyna speciosa</i>) leaves have been reported to contain a diverse array of secondary metabolites with pharmacological activities, including antibacterial, antioxidant, …

Read PDF
Bioinformatics Metagenomics
Full text 2026

Structural Characteristics, Comparative Analyses, and Conservation Significance of the Complete Chloroplast Genome of the Critically Endangered &lt;i&gt;Lithocarpus yongfuensis&lt;/i&gt; (Fagaceae)

Gu F, Yang L.

This study aims to delineate the chloroplast (cp) genome of the critically endangered <i>Lithocarpus yongfuensis</i> (Fagaceae), with fewer than 10 wild individuals known. Genomic information for this species is scarce, hindering conservation strategies. We sequenced, …

Read PDF
Bioinformatics
Full text 2025

A revised classification of Dryopteridaceae based on plastome phylogenomics and morphological evidence, with the description of a new genus, &lt;i&gt;Pseudarachniodes&lt;/i&gt;

Zuo ZY, Rouhan G, Dong SY, et al.

Dryopteridaceae are the largest fern family and include nearly 20% of extant fern diversity, with 24 currently recognized genera. Recognition and delineation of genera within this family have varied greatly. The three-subfamily classification of Dryopteridaceae …

Read PDF
Bioinformatics
Full text 2024

Probable zoonotic pulmonary prosthetic valve infective endocarditis and acalculous cholecystitis caused by <i>Streptococcus equi</i> subspecies <i>zooepidemicus</i>

Eustace M, Strey G, Kidd TJ, et al.

Prosthetic pulmonary valve endocarditis is a rare but serious infective complication following correction of tetralogy of Fallot (ToF). We describe a probable zoonotic case of <i>Streptococcus equi</i> subspecies <i>zooepidemicus</i> prosthetic pulmonary valve infective endocarditis in …

Read PDF
Bioinformatics
Full text 2025

Orthology inference at scale with FastOMA

Majidian S, Nevers Y, Yazdizadeh Kharrazi A, et al.

The surge in genome data, with ongoing efforts aiming to sequence 1.5 M eukaryotes in a decade, could revolutionize genomics, revealing the origins, evolution and genetic innovations of biological processes. Yet, traditional genomics methods scale …

Read PDF
Bioinformatics
Full text 2025

Chemical Evolution of Life on Earth

Lei L, Burton ZF.

<b>Background/Objectives</b>: The origin of genes and genetics is the story of the coevolution of translation systems and the genetic code. Remarkably, the history of the origin of life on Earth was inscribed and preserved in …

Read PDF
Bioinformatics
Full text 2025

Comparative chloroplast genomics of Cypripedioideae: structural divergence, adaptive evolution, and phylogenomic insights

Zhao X, Lan X, Wang Z, et al.

The Cypripedioideae subfamily (slipper orchids) exhibits remarkable ecological diversity, spanning temperate to tropical habitats, yet the molecular mechanisms underlying its adaptive radiation remain poorly understood. Chloroplast genomes, with their critical roles in photosynthesis and conserved …

Read PDF
Bioinformatics Structural Variants
Full text 2026

Two novel saprobic &lt;i&gt;Distoseptispora&lt;/i&gt; species from southern China (Distoseptisporales, Distoseptisporaceae)

Tian XG, Han JJ, Lu YZ, et al.

<i>Distoseptispora</i> comprises ecologically significant species that are predominantly saprobic, inhabiting freshwater and terrestrial ecosystems, where they contribute to nutrient cycling and organic matter decomposition. Recent taxonomic studies have revealed several new <i>Distoseptispora</i> species, highlighting its …

Read PDF
Bioinformatics
Full text 2024

A region of suppressed recombination misleads neoavian phylogenomics

Mirarab S, Rivas-González I, Feng S, et al.

Genomes are typically mosaics of regions with different evolutionary histories. When speciation events are closely spaced in time, recombination makes the regions sharing the same history small, and the evolutionary history changes rapidly as we …

Read PDF
Bioinformatics