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Mining Two Decades of Soybean Genomics Literature Using Rule-Based Text Mining: Chromosome-Resolved Patterns of <i>Glyma</i> Gene Mentions
Soybean (<i>Glycine max</i> [L.] Merr.) is a globally important crop with a rapidly expanding body of genomics literature driven by advances in sequencing and functional genomics. Thousands of studies reference soybean genes using standardized <i>Glyma</i> …
Read PDFBeyond multilocus barcoding: harnessing phylogenomics and genome mining for next-generation Trichoderma-based bioproducts
Trichoderma species are among the most widely exploited fungal platforms in agricultural and industrial biotechnology due to their capacity to produce hydrolytic enzymes, secondary metabolites, and multifunctional biocontrol activities. However, their practical application has long …
Read PDFIntegrating CRISPR functional genomics with admixture-aware psychotropic pharmacogenetics in Brazil
Variability in the clinical response to psychotropic drugs remains a major barrier to effective psychiatric care. Pharmacogenetics offers a powerful framework for individualizing antidepressant and antipsychotic therapy, yet its implementation is complicated in genetically diverse …
Read PDFInvestigation of Pharmacogenomic Variants in the CYP (P450) Family in Native American Populations of the Brazilian Amazon
The cytochrome P450 (CYP) enzyme superfamily is essential for xenobiotic metabolism, detoxification pathways, and the regulation of cellular homeostasis. Genetic variability in CYP genes, together with environmental factors, contributes substantially to interindividual and interethnic differences …
Read PDFGenomics-Driven Mulberry Breeding for Improving Agronomic Traits and Circular Utilization Value
This review systematically summarizes the history of and recent progress in mulberry research, with particular emphasis on advances in mulberry genomics and its role in modern breeding and the circular bioeconomy. Studies on whole-genome sequencing, …
Read PDFDeveloping a Framework for Safe AI Model Development on Sensitive Healthcare Data
No abstract available.
Read PDFA turn-on fluorescent nucleoside enabling sequence-insensitive DNA labeling
Fluorescent nucleobase analogs (FBAs) are valuable tools for studying nucleic acid structure and dynamics. However, their utility is often limited by substantial fluorescence quenching upon incorporation into oligonucleotides and variable brightness influenced by neighboring bases. …
Read PDFquercusTOA: integrating functional annotations and comparative genomics across oak lineages
Oaks (<i>Quercus</i> L.) are key components of Northern Hemisphere Forest ecosystems, yet the integration of their rapidly growing genomic resources remains challenging. Here, we present quercusTOA, a genomic and functional resource that integrates nine <i>Quercus</i> …
Read PDFHigh acceptability of a national platform for public health genomic data sharing and surveillance in Australia: a mixed methods study
<h4>Background</h4>Pathogen genomics has increasingly been integrated into infectious disease surveillance, outbreak detection, and response globally. However, formal evaluation of pathogen genomic surveillance systems has been a major gap. In Australia, the AusTrakka platform was established …
Read PDFSpecial Issue “Functional and Structural Genomics Studies for Plant Breeding”
No abstract available.
Read PDFIntegrating genomic medicine into primary care -examining perceptions of community advisory board members
The Alabama Genomic Health Initiative (AGHI), funded by the state of Alabama, aims to provide genomic testing, interpretation, and counseling free of charge to Alabama residents. A 14-member Community Advisory Board (CAB) was convened in …
Read PDFKnowledge, attitudes, and training on genetic testing among public health professionals and students in the United Arab Emirates: a qualitative study
<h4>Background</h4>As genetic testing becomes increasingly relevant to precision public health, understanding the preparedness of the public health workforce is essential. In the United Arab Emirates (UAE), national initiatives such as the Emirati Genome Program are …
Read PDFDevelopment and validation of an open data model for pharmacogenetics to enable semantic interoperability in clinical practice
Pharmacogenetics uses genetic testing to improve the safety and effectiveness of prescribed medicines, yet implementation at scale remains limited due to the absence of interoperable health IT solutions that integrate results into prescribing workflows. This …
Read PDFA digital archive reveals how a funding agency cooperated with academics to support the nascent field of genomics
State-supported research funding agencies are critical to the scientific enterprise. However, it remains unclear how funding agencies cooperate with academic communities to realize common scientific goals. Here, we present a fully digital archive assembled by …
Read PDFGenomics, Molecular Taxonomy, and Functional Genetics: Insights from a Diverse Collection of Studies
This Special Issue of <i>Genes</i> brings together a set of contributions that, despite their apparent thematic diversity, share a common methodological thread: the application of genomic and molecular tools to fundamental questions in animal biology, …
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